Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq16628 201 1e-46 seq118272 147 2e-30 seq368444 87.8 2e-12 seq128081 87.8 2e-12 >seq16628 Length=231947 Score = 201 bits (222), Expect = 1e-46 Identities = 556/847 (66%), Gaps = 13/847 (2%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTAC-TGTATTGCACAATTTCTGCGCA 154645 ||||| || || || ||||||| || ||| | || |||| | || ||||| | || Sbjct 199527 GACGCTAAATTACACACGGCAACCTCGTCA-ACGGACGTGTACTCTACGATTTCGGTACA 199585 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 | |||||| ||| || || || | |||||| ||||||||||| | ||||| ||||| Sbjct 199586 TAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATTTTCTATTGCAGGCGTC 199645 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAG 154765 |||||| || || || || || || |||||| ||| | ||| ||||||| | | || Sbjct 199646 TTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGATAATTGCACTCCAGAG 199705 Query 154766 ACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTT 154825 | | || |||||||| | | || || || |||| ||| | |||| ||||| Sbjct 199706 TTGTTGTGCACGAACTTGACGCCGATAACGTTTCTCCGTCTCGTATCGAACGTAAAGTTT 199765 Query 154826 TTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGA 154885 ||| || ||| | ||| || || || |||| || ||||||||||| || Sbjct 199766 TTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTCGTGTGGACACATCAACGA 199825 Query 154886 CCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAA 154945 ||| ||| | | || || || | |||||| || ||||| || | ||||||| |||| || Sbjct 199826 CCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGGAATCCACAAACCGTAAAA 199885 Query 154946 CAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATA 155005 | |||||| ||| | | ||||| || | ||| |||| || ||||||||| | Sbjct 199886 AAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTTTAGATCCAAAAAATCGAA 199945 Query 155006 TATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC------TTTGCGTTTTCC 155059 | || ||||||||||| || | ||| | ||| ||||| || |||| || || Sbjct 199946 CACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCCCGGTCTTTTG---TTGCC 200002 Query 155060 TCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCT 155119 || ||||| |||| ||| | || || ||||| || | || ||| | | ||| | Sbjct 200003 ACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATGGGTACAATACCGTT 200062 Query 155120 GGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAAC 155179 | || || || || || ||| || || |||||| || || | |||| Sbjct 200063 CGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCACGAATGTTGTGTATGTTAAT 200122 Query 155180 GCCCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTC 155238 || | || || |||| |||| || || | ||||| | || || ||||| |||| Sbjct 200123 TCCTATTCCACCAGCCG-ATTTTGAAATGAGTGCACACTGTTTCAGTGTATCGTATATTC 200181 Query 155239 CTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGC 155298 ||| ||||| || ||||||| ||| || ||||| || | ||| |||| ||| Sbjct 200182 CTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGACAGTTGCGGTTTAGGAG 200241 Query 155299 AGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGT 155358 || || || | ||| ||| || || |||||| ||| | | | | ||||| Sbjct 200242 TCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTCAGACATGAGGTTGT 200301 Query 155359 AAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCA 155418 | ||||| || || | || || ||||| || || |||| |||||||| |||| Sbjct 200302 ACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGAATGCCAATCGAAACGCGCATAAGCA 200361 Query 155419 TGTGTTG 155425 ||||||| Sbjct 200362 TGTGTTG 200368 >seq118272 Length=246527 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | | ||| || |||| ||||||||||||||| Sbjct 51204 GTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCGTCCTCAAGCTGCTTGCCG 51145 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||| ||||| |||||||| ||||| || || || || || ||||| Sbjct 51144 GCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTGGATCTTG-GCTTT 51086 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || |||| || || || || | ||| | |||||||||||||| ||| Sbjct 51085 CACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATGGTCTTGCCGGTCAGAGT 51026 Query 64426 TTTTACGAAAATTTGCAT 64443 |||||| ||||||||||| Sbjct 51025 TTTTACAAAAATTTGCAT 51008 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| || ||||| ||||| | || || ||||| || |||||||| || | Sbjct 50778 CCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGAC 50719 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | ||||| ||||||||||| ||| | || || |||||||| ||||||||| Sbjct 50718 AGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGA 50659 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || ||||| ||| || ||| | || |||| || ||||| Sbjct 50658 ATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACC 50599 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||||| ||| || ||||| || ||||| Sbjct 50598 TCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || || ||||| || |||||||| |||| | ||||| |||| Sbjct 50991 AGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCC 50932 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || |||||||| | ||||| ||||||||||| || ||||| || || || ||| Sbjct 50931 TCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT 50872 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || || | ||||||| || || ||||| | || | |||| Sbjct 50871 TGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATGGTC 50812 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| ||| ||||| || |||||||| Sbjct 50811 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || || |||| || || ||||| || || |||||||| | Sbjct 50322 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGAC 50263 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| ||||||||||||||| | || || |||||||| ||||||||| Sbjct 50262 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGA 50203 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || ||||| ||| || ||| | ||| || | || ||||| Sbjct 50202 ATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACC 50143 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | ||||| ||||| || ||||| Sbjct 50142 TCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || || || | || || || || ||||||||||| || | Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||||||||||||||||||||| | || || || ||||||||||| || Sbjct 49806 AAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 49747 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || ||||| || || ||| || || | || || | |||| ||||| Sbjct 49746 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGC-TCCAC 49688 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || ||||||| ||||| ||||| || ||||| Sbjct 49687 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| ||||||||||| | | ||| || | ||||| | |||||| || Sbjct 51432 GTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGCTTTCCA 51373 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||||||||| || ||||| ||||| || || || || || ||| Sbjct 51372 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 51313 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || || | || | |||||| || |||| || Sbjct 51312 ACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 51253 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| ||||||||| Sbjct 51252 TTCACGAAGATTTGCATT 51235 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| || ||||||||| Sbjct 50520 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCGAGTTGCTTGCCG 50461 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || || || ||||| || || || | |||| ||||| Sbjct 50460 GCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTGGA-TTTTGGCTTT 50402 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||| |||| || || ||||| | || | ||| |||||||| | || Sbjct 50401 GACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTTGCCGGTGAGGGT 50342 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| || ||||| Sbjct 50341 TTTGACGAAGATCTGCAT 50324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || || |||| || || ||||| || |||||||| || | | Sbjct 50094 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 50035 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| || || ||||||||||| | || || |||||||| || || || Sbjct 50034 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 49975 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 ||||| || || || || ||||| ||| || || | || || | |||| || || Sbjct 49974 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGC-TCAAC 49916 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || || || ||||| ||||| Sbjct 49915 CTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 >seq368444 Length=413118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| ||||| | ||||| || || | ||||| || || || |||||||| || | Sbjct 77699 CCGCCACGCAAGCGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 77758 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||||| | || || ||||||||||| ||| | || || ||||||||||| || || Sbjct 77759 AGGGTGCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCAGGGGGG 77818 Query 64337 ATTCCT 64342 || ||| Sbjct 77819 ATGCCT 77824 >seq128081 Length=1306280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 154643 GCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGC 154702 ||||| || ||||| |||||||| ||||| ||||| || || ||| ||||||| || Sbjct 764232 GCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGC 764173 Query 154703 GTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||||||||||| ||||| ||||||||||| || Sbjct 764172 GTCTTTGTACAGCATGTAAGGGGTGCCCGTCTC 764140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497337115544480