Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq128081 82.4 8e-11 >seq128081 Length=1306280 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/132 (74%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 || ||| | || || ||||| ||||||||||||||| | ||| | |||||| |||| Sbjct 763208 TTTGCGATGTACCTGGAGCCATGGCACGCGGACGTGTTTGACTTCCTGGACCTGAAAAAG 763267 Query 94240 AACCACGGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCA 94296 ||| ||||| || ||||| |||| | || ||||||||||| |||||| | ||| Sbjct 763268 AACACGGGCAAGGA---GGAGAACCGGGCACGGGATCTCTTCTACGCCCTCTGGATCCCA 763324 Query 94297 GACCTTTTTATG 94308 ||||| || ||| Sbjct 763325 GACCTGTTCATG 763336 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94454 AGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCA 94513 |||||||| | ||| |||| ||| | |||||||| || || ||||| ||| || Sbjct 764108 AGCTGTGGTACGCCATCCTGGAGTCGCAGATAGAGACGGGCACCCCTTACATGCTGTACA 764167 Query 94514 AGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATC 94573 | ||| | |||| ||||||||||||| || ||||||| |||||| || || | Sbjct 764168 AAGACGCCTGCAACAGCAAGTCCAACCAGAAGAACCTCGGCACCATCAAGTGCAGCAACC 764227 Query 94574 TGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 ||||||||||| | | ||||| || | || |||||| Sbjct 764228 TGTGCACCGAGGTCATTGAGTACACCGCGCCAGACGAG 764265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492438246692320