Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq118272 134 1e-26 seq128081 95.1 1e-14 >seq118272 Length=246527 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | | ||||| || || |||||||||||| Sbjct 50095 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 50036 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| |||||||||||| || |||| |||| |||||||| || ||||| || Sbjct 50035 GAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 49976 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| || | | ||| | |||||| ||| ||| || Sbjct 49975 GATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAAC 49916 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| ||| | ||| || ||||| || || || ||||||||||||||| || Sbjct 49915 CTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGCCT 49864 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| ||| | || | | | || || || || ||||||||||| || ||||| | Sbjct 51222 CGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCG 51163 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| || || || |||| | |||| |||||||||||||||||||| || ||||| ||| Sbjct 51162 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTG 51103 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || ||| | | ||| | |||||| | | ||| ||||||| || | Sbjct 51102 TCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATG 51043 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || |||||||||||||||||||| |||||| Sbjct 51042 GTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 116 bits (128), Expect = 4e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | || | | | |||||||| ||||||||||||||| Sbjct 49867 GCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 49808 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || || |||| |||| ||||| || ||||| || || Sbjct 49807 CAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 49748 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | | ||| | |||||| ||| ||||| Sbjct 49747 GATCCCCTCCTTGTC-TTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCA 49689 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| ||| | ||||| || ||||| ||||| || || ||||||||| || Sbjct 49688 CCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATGACT 49636 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||| || | ||| | | | ||||| || || ||||||||||| Sbjct 51007 GCCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 50948 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||||||||| |||| |||| |||||||| ||||| || || Sbjct 50947 CAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 50888 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| ||| || | | ||| | ||| || | | ||| || Sbjct 50887 AATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAAC 50828 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | || || || |||||||| |||||||| || |||||| Sbjct 50827 TTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | || | ||| || |||| | | |||||||| || ||||||||||| Sbjct 50551 GCCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 50492 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || |||||||| || |||| |||| | |||||| || ||||| || Sbjct 50491 CAGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGG 50432 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| ||| | | ||| | ||||| | | ||| || Sbjct 50431 GATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGAC 50372 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||||| || || || ||||| || || ||||||||| Sbjct 50371 TTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | ||| | | | ||||| || || ||||||||||| Sbjct 50779 GCCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGA 50720 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || ||||| || || || | | |||| |||||||| || || ||||| Sbjct 50719 CAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGG 50660 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| | || | | || | ||||| | | ||||| Sbjct 50659 AATACCTTCCTTGTC-CTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCA 50601 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || || |||||||| || || || ||||||||| Sbjct 50600 CCTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | || | | | ||||||||||| |||||||| ||| Sbjct 51463 GCCACCACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGA 51404 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | || || || | | |||| |||||||| |||||||| || Sbjct 51403 CAGGGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGG 51344 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||||||| | | ||| || Sbjct 51343 AATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGAC 51284 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || ||||| || || || || || ||||| Sbjct 51283 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTGCAT 51236 >seq128081 Length=1306280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901 |||||| || || |||||| ||| ||||| || |||| ||| |||||||| || || Sbjct 763423 CTCAAAGTCTTCTCCGTAGACCTCGTGCAGGCCAGGGCACTCATGGGGACACATGAGGGA 763364 Query 153902 CCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACAT 153961 |||||| | || | || || ||||||||||| || || | |||||| ||||| | Sbjct 763363 CCACATCTGATCCTGTTCCACCCGCCGCATGAACAGGTCTGGGATCCAGAGGGCGTAGAA 763304 Query 153962 GAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATA 154021 ||| || || ||| | |||||| |||| |||| |||||| | || | | | | Sbjct 763303 GAGATCCCGTGCCCGGTTCTCCTCCTTGCCCGTGTTCTTTTTCAGGTCCAGGAAGTCAAA 763244 Query 154022 GATGTCGGCGTGCCAGGGTTCAATGTA 154048 | ||| |||||||| || || | ||| Sbjct 763243 CACGTCCGCGTGCCATGGCTCCAGGTA 763217 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 153632 GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATT 153691 |||| || |||||| | || ||||| ||| ||||||||||| || ||| ||| | || Sbjct 764258 GGCG-CGGTGTACTCAATGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTT 764200 Query 153692 TTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 | ||| ||| |||| ||||| ||||||||| | |||||||| || ||| ||||| Sbjct 764199 CTTCTGGTTGGACTTGCTGTTGCAGGCGTCTTTGTACAGCATGTAAGGGGTGCCCGTCTC 764140 Query 153752 GACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGC 153810 | |||| || | ||| | || ||| | |||||| ||||| | |||| |||| Sbjct 764139 TATCTGCGACTCCAGGAT-GGCGTACCACAGCTGCTGCGCCTGCACCTGGCGCCGGTAGC 764081 Query 153811 GGCCCTCGCTCTCGTA 153826 | ||| | |||||| Sbjct 764080 GCTTCTCCCCCTCGTA 764065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493970337666240