Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq118272 141 9e-29 >seq118272 Length=246527 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| ||| | ||||||||||| || || ||||| || | Sbjct 50778 CCACCACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGAC 50719 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || ||||| |||||| ||||||||||||||||| Sbjct 50718 AGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGA 50659 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| |||||| ||| | | |||| ||||| | ||| || Sbjct 50658 ATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACC 50599 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||||||||| || || || ||||||||| Sbjct 50598 TCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||| | ||| | || |||||||| || || ||||| || | Sbjct 51006 CCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAC 50947 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || ||||| || ||| |||| | |||||||| || || || Sbjct 50946 AGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGA 50887 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||||| | ||||| ||| || | ||| ||| Sbjct 50886 ATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACT 50827 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || |||||||||||||| |||||||| || |||||| Sbjct 50826 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| |||| || ||||| || || || ||||| || | Sbjct 50550 CCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 50491 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || || ||| ||||||| ||||||||||| || || Sbjct 50490 AGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGG 50431 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| |||||| |||| | ||| | ||||| | ||||||| Sbjct 50430 ATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACT 50371 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||||||||| || ||||| || || ||||||||| Sbjct 50370 TCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| |||| || | || || ||||| || || ||||| || Sbjct 51235 TCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGA 51176 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| || || ||||| || || || |||| | ||||| || || ||||| Sbjct 51175 CAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGG 51116 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || || | | ||||| |||||| | |||||| Sbjct 51115 AATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGAC 51056 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || |||||||||||||||||||||||||| |||||| Sbjct 51055 CTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| || | || |||||||| || || ||||| ||| Sbjct 50094 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 50035 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || || || ||| |||||| ||||||||||| || || Sbjct 50034 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 49975 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| |||||| ||| | | ||||| ||||| | ||| || Sbjct 49974 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACC 49915 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| || | ||| ||||| || || || || ||||||||||||||| || Sbjct 49914 TCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGCCT 49864 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| || | || |||||||| || ||||||||||| | Sbjct 50322 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGAC 50263 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || || |||||| ||||||||||||||||| Sbjct 50262 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGA 50203 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||||| ||| | | |||| ||||| | ||| || Sbjct 50202 ATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACC 50143 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || ||||| || ||||| || || ||||||||| Sbjct 50142 TCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| |||| || | || ||||| || ||||| ||||| ||| | Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| || ||||| ||||| || Sbjct 49806 AAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 49747 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| || || ||| | | ||| | ||||| | ||| || Sbjct 49746 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACC 49687 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| || | ||||| |||||||| ||||| || || ||||||||| || Sbjct 49686 TCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATGACT 49636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473304628230080