Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq16628 269 2e-67 seq118272 113 4e-20 >seq16628 Length=231947 Score = 269 bits (298), Expect = 2e-67 Identities = 741/1120 (66%), Gaps = 49/1120 (4%) Strand=Plus/Minus Query 123235 CCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA- 123293 ||||||| ||||| || || ||| | | || ||||||| ||||| ||||| |||| Sbjct 200049 CCATGCTACGAGTGTATAACAACACGGCACGTTACGTCGATCAGGGTGGCAA---CAAAA 199993 Query 123294 -----GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAA 123348 || ||||| || |||||||| ||||||||||||| ||||||| ||||||||| Sbjct 199992 GACCGGGAGCGATCGCCATCTATCTGGAACCGTGGCACGCAGATGTGTTCGATTTTTTGG 199933 Query 123349 ATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTAT 123408 || ||||| || | || ||||| | | || || ||| | || |||| ||| | Sbjct 199932 ATCTAAAAAAAAATACCGGTAAAGAAGAGAGTAGGGCACGTGATCTTTTTTACGGTTTGT 199873 Query 123409 GGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTC 123468 || | |||||||| || ||| | | || |||| || || | |||||| | ||||||| Sbjct 199872 GGATTCCCGATTTATTCATGAAAAGGGTGGAAGAAGATGGAATATGGTCGTTGATGTGTC 199813 Query 123469 CCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGC 123528 | | |||| | || || || |||||| | | || || | | |||| | Sbjct 199812 CACACGAAAGTCCTCACCTGCAAGATGTATACGGCGAAGACTTCGAAAAACTTTACGTTC 199753 Query 123529 AATACGAGCGCGAAGGCAAACAGGTTA-----GTCAGGTTCCGGCACGTGATTTGTTCAA 123583 ||||||| || || |||| |||| |||| |||| |||| | | | | Sbjct 199752 GATACGAGA-CGGAG--AAAC--GTTATCGGCGTCAAGTTCGTGCACAACAACTCTGGAG 199698 Query 123584 ATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTG 123643 ||||||||| ||||| ||||| || ||||| || ||| | |||||||||||||| Sbjct 199697 TGCAATTATCGAATCACAAACGGAAACTGGTACGCCATATATGTTATACAAAGACGCCTG 199638 Query 123644 CAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGA 123703 ||| || ||| | ||||| | ||| | || |||||||||||||||||||| || |||| Sbjct 199637 CAATAGAAAATCGAATCAAAAAAACGTCGGTACAATAAAATGTAGTAATCTATGTACCGA 199578 Query 123704 AATTATCGAATACAG---CGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTG 123760 ||| | || |||| || || ||| || |||||||||||||| || |||||| Sbjct 199577 AATCGTAGAGTACACGTCCGTTGACGAG---GTTGCCGTGTGTAATTTAGCGTCGATTGC 199521 Query 123761 CGTGAATCGTTGCGTCGAAAACGG-CGCTTTTAATTTCCAAA--CGC-TCAAACGCATAA 123816 ||||||| | ||| | | || | ||| | ||| ||| || |||| ||| Sbjct 199520 TTTGAATCGATTCGTTTATCATGGACACTTCGATTTTGAAAAATTGCGTCAA----GTAA 199465 Query 123817 CAAAAACTGTAGTAA--AG-AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGG 123873 | | | || |||| || || ||||| ||||| ||||||||||||| |||||| | Sbjct 199464 CTAGA---GTCGTAACTAGAAACTTGAATAAAATAATCGATGTTAATTATTATCCAATTC 199408 Query 123874 AGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGG 123933 |||||| | || || || || | || | ||| | || | ||||| |||| Sbjct 199407 CCGAAGCGAAACTTTCAAACATGCGGCATCGCCCTATTGGAATCGGAGTCCAAGGTTTGG 199348 Query 123934 CCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTG----CTT 123989 ||||||| || | | | | | || | ||| | |||||||| ||| || Sbjct 199347 CCGACGCTTTCATTTTATTAAGACTTCCTTTCGACTGTGACGAAGC----TTGTGAAATT 199292 Query 123990 AATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCG 124049 |||| | |||| |||||||| ||||| || |||||||| | ||| || ||||| | Sbjct 199291 AATAAGAAAATCTTTGAAACAATATATTATGGAGCTTTGGAAGAGAGTTGTGAACTGTCT 199232 Query 124050 AAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAG 124109 |||| || ||||||| | ||| | || || || | | ||| || | ||| Sbjct 199231 AAAAAGTTTGGTCCGTACGAGACGTACCCTGGTAGTCCAGTATCACAAGGAATCCTTCAG 199172 Query 124110 TACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGC 124169 ||||| |||||||||| ||||| |||| ||||||| ||| | ||||||| || | Sbjct 199171 TACGATATGTGGAATGTAACACCTTCAAACCTGTGGGATTGGTCTGCTTTAAAAGAAAGA 199112 Query 124170 ATATCGACGC-ACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCAC 124228 || | | || || | || || || | || || ||||| || ||| | || Sbjct 199111 AT-TAAAAGCTTTGGAATCCGCAATAGTCTTCTCGTAGCACCAATGCCAACAGCATCTAC 199053 Query 124229 TGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCG 124288 ||| || ||| | || || ||||| | | || || | ||||| |||| |||| || Sbjct 199052 TGCGCAGATTCTTGGTAATAACGAGGCAATGGAACCATACACTAGCAATGTGTATACTCG 198993 Query 124289 ACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCAT 124328 || || | | || || ||||| | ||||||| ||| Sbjct 198992 GCGCGTACTTTCTGGAGAATTTCAGATAGTAAATCACCAT 198953 >seq118272 Length=246527 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||||| || || || || || || ||||| || ||||| || || || Sbjct 51237 ATTCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCC 51178 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || || || || | || | || || |||||||| Sbjct 51177 GACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGA 51118 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || ||| | ||| | |||||| | |||| Sbjct 51117 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCG 51058 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 51057 ACCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || || || || || || || ||||||||||| || |||||| Sbjct 51462 CCACCACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAC 51403 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| ||| ||||| || ||||| || | || | || ||||||||||| ||| Sbjct 51402 AGGGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGA 51343 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || |||| || | || | ||||||| | |||||| Sbjct 51342 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 51284 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || || || || || || || |||||||| Sbjct 51283 CTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTGCAT 51236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||||| | || | || || || || ||||| ||||| || || || Sbjct 50553 ATGCCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCC 50494 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| || || ||| | ||||| || ||||| ||||| Sbjct 50493 GACAGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGG 50434 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || ||||| ||||| ||| | ||||| | |||| Sbjct 50433 GGGATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCG 50374 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||||||||||| || ||||| || || || ||||| Sbjct 50373 ACTTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| |||| || || || || || || || ||||| || || || || ||| Sbjct 49869 ATGCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 49810 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||| ||||||||||| ||| Sbjct 49809 GACAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGC 49750 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || |||||||| || || | ||| | |||||| | ||| Sbjct 49749 GGGATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCC 49690 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||||| ||||| || ||||| || || || ||||| Sbjct 49689 ACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449915555420320