Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq16628 100 3e-16 seq128081 82.4 9e-11 >seq16628 Length=231947 Score = 100 bits (110), Expect = 3e-16 Identities = 455/713 (64%), Gaps = 24/713 (3%) Strand=Plus/Plus Query 115909 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 115968 ||| | |||||||| || | ||| || ||||| | || || || || || ||||| Sbjct 199005 TTGCTAGTGTATGGTTCCATTGCCTCGTTATTACCAAGAATCTGCGCAGTAGATGCTGTT 199064 Query 115969 GGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGG 116028 ||||| ||||| | |||||| || ||||||| || | | |||| | ||| || | Sbjct 199065 GGCATTGGTGCTACGAGAAGACTATTGCGGATTCCAAAGCTTTTAATTCTTTCTTTTAAA 199124 Query 116029 GCGTCCCAGTCGTAGTTGAGCTTTG----TCTCCCCCTCCCACATATCAAACTGGAGGAT 116084 || ||| || | || |||| | | | ||| ||||||| |||| ||||| Sbjct 199125 GCAGACCAATCCCAC---AGGTTTGAAGGTGTTACATTCC-ACATATCGTACTGAAGGAT 199180 Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT 116142 ||||| || |||| || | ||||| || || || ||| | | || | Sbjct 199181 TCCTTGTGATACTGGACTACCAGGGTACGTCTCGTACGGACCA--AACTTTTTAGACAGT 199238 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 || | ||| | || | ||| | | ||| ||||| ||||| || ||| ||| | Sbjct 199239 TCACAACTCTCTTCCAAAGCTCCATAATATATTGTTTCAAAGATTTTCTTATTAATTTCA 199298 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 || ||||| | || || | || | | ||||| || | || || | ||||||| Sbjct 199299 CAAGCTTCGTCACAGTCGAAAGGAAGTCTTAATAAAATGAAAGCGTCGGCCAAACCTTGG 199358 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC--TTTCGAG-CGGTCTCCACGGGA 116319 || |||| ||||| |||||||| | ||| || || ||||| ||| | ||| Sbjct 199359 ACTCCGATTCCAATAGGGCGATGCCGCATGTTTGAAAGTTTCGCTTCGGGA---ATTGGA 199415 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 ||| |||| |||||| | |||| | ||| | || || || | || | || | | Sbjct 199416 TAATAATTAACATCGATTATTTTATTCAAGTTTCTAGTTACGACTCTAGTTACTTGACGC 199475 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 | ||||| |||| || | ||| | | || || | | | || || ||| Sbjct 199476 AATTTTTCAAAATCGAA-----GTGTC-CATGATAAACGAATCGATTCAAAGCAATCGAC 199529 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 || | ||||||||| | ||| || |||||||||| ||||| ||||| | | Sbjct 199530 GCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACTCTACGATTTCGGTACATAGA 199589 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || || || || || | ||| |||||||| || ||| | || || || || ||| Sbjct 199590 TTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATTTTCTATTGCAGGCGTCTTTG 199649 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 || | |||||||||||| || || |||||||| || | || ||| || |||| Sbjct 199650 TATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGATAATTGCACTCCA 199702 >seq128081 Length=1306280 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||| | |||||||||| || | ||| || ||||| || Sbjct 776051 TAGATGTTGCTGGTGTACGGCTCGATCGACTCATTGTTGCCGAGGATCTGTGCTGTCGAC 775992 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || || ||||| ||||||| | |||||||||||| Sbjct 775991 GCCGTCGGCATCGGTGCCAGCAAAAGGCTGTTGCG 775957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610673624970720