Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq128081 116 6e-21 seq297272 104 4e-17 seq16628 87.8 3e-12 >seq128081 Length=1306280 Score = 116 bits (128), Expect = 6e-21 Identities = 178/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 205064 TATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTT 205123 || || ||||| ||| | ||||||| ||||| || || ||| || || || | Sbjct 763440 TACTTGGTGTATAGCTTCTCAAAGTCTTCTCCGTAGACCTCGTGCAGGCCAGGGCACTCA 763381 Query 205124 TTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTG 205183 | ||||||||| || |||||||||||||| | || ||||| | ||| |||||||| | Sbjct 763380 TGGGGACACATGAGGGACCACATCTGATCCTGTTCCACCCGCCGCATGAACAGGTCTGGG 763321 Query 205184 ATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTC 205243 ||||| ||| |||| || ||||| || |||| | | || | || |||||||||| Sbjct 763320 ATCCAGAGGGCGTAGAAGAGATCCCGTGCCCGGTTCTCCTCCTTGCCCGTGTTCTTTTTC 763261 Query 205244 AAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCC 205302 | |||||| ||| | | | ||| |||||||| ||||| | ||| || | ||| || Sbjct 763260 AGGTCCAG-GAAGTCAAACACGTCCGCGTGCCATGGCTCCAGGTACATCGCAAATGCCCC 763202 Query 205303 TGGCCTCTTGT 205313 ||||||| || Sbjct 763201 GGGCCTCTGGT 763191 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||| | | ||||||| | ||||| | |||||| | ||| ||||| | Sbjct 777093 CTTCCAGCCGAAGAAGTGCATGCTGGTGAGTTTCCCATAGTTGGGTTGGGCGATGTGCAC 777034 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 |||||| |||||||| ||||| | || | |||| ||||||||||| | | ||| | Sbjct 777033 GTTCAGCGACTGGCTCTGGTCCACAAACGCTCCCCGGTCTGCGGCCATCTGCAGGATGTT 776974 Query 204034 CTTCTGCGAAATCTCCCACACCGTC 204058 |||||| | ||||||||| |||||| Sbjct 776973 CTTCTGAGGAATCTCCCAGACCGTC 776949 >seq297272 Length=244611 Score = 104 bits (114), Expect = 4e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||||||| ||||| ||||||| | | ||||||| ||||||| || ||| | Sbjct 163573 CCTCGTCCCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 163514 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | ||||| || |||| || || | || || ||||| ||||| ||||| ||||||| Sbjct 163513 TCAGCCAGAAGATGGATGCGAACGATCCCGAGAAGAAGATGCCCTCGACGGCTGCAAACG 163454 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | |||| | ||| ||||| | |||| || || | |||| || ||||| || | Sbjct 163453 CGACGATGCGCTCGCCAAATGTGGCGCTGCGGTTGCTGATCCAGTTTAGTGCCCAGTCCG 163394 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA 160164 ||||| | ||||| ||||| ||| |||||||| || Sbjct 163393 CCTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAA 163354 >seq16628 Length=231947 Score = 87.8 bits (96), Expect = 3e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 205127 GGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATC 205186 |||||||||| ||||| || ||| |||| |||||| | ||| || | ||| ||| Sbjct 199812 GGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGGAATC 199871 Query 205187 CACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAG 205246 |||| |||||||| |||||||| |||||| | | || | || || ||||| | Sbjct 199872 CACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTTTAGA 199931 Query 205247 TCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGC 205306 |||| || | | || ||||||||||| || | | | ||| || || || || Sbjct 199932 TCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCCCGGT 199991 Query 205307 CTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGC 205366 || ||||| |||||||| || || || | | | ||| | ||||| ||||| || Sbjct 199992 CTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATGGGT 200051 Query 205367 ACCAGACCGTT 205377 || | |||||| Sbjct 200052 ACAATACCGTT 200062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791482656435520