Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq118272 168 2e-36 seq368444 98.7 2e-15 >seq118272 Length=246527 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||||||||| || ||||||||||||| |||||| || | || || Sbjct 51456 CGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTT 51397 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||||||| || ||||||||||||||||||||||| ||| ||| Sbjct 51396 CGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCT 51337 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || |||| Sbjct 51336 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGG 51277 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || ||||| Sbjct 51276 GTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTG 51239 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || || || || |||| ||||||||| | || || Sbjct 51228 CGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTA 51169 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||| |||||||||||||| ||||||||| ||| ||| Sbjct 51168 CGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCT 51109 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| ||||| |||||| | | || || || | Sbjct 51108 TCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGA 51049 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || |||||||| ||||||||||| Sbjct 51048 GTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTG 51011 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || || ||||| || |||| ||||| || | || || Sbjct 50316 CGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTT 50257 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||| ||||| ||||||||||| || ||| ||| ||| Sbjct 50256 CGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCT 50197 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||||||| |||| ||||| | | || || |||| Sbjct 50196 TCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGT 50137 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| ||||| ||||| || || || || Sbjct 50136 GTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTG 50099 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || |||||||| || | ||||||||| | ||| || Sbjct 49860 CGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTG 49801 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||| |||||||| ||||||||||| ||||| |||||||| || || || Sbjct 49800 CGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCC 49741 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| ||| | ||||| | | || || || | | Sbjct 49740 TCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGC 49681 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||| || || || || Sbjct 49680 GTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTG 49643 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || || ||||| || |||| ||||||||| | | || Sbjct 50088 CGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTA 50029 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 50028 CGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCC 49969 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||||||| ||||| ||||| | | || || || | | Sbjct 49968 TCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGC 49909 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| || || |||||||| || Sbjct 49908 GTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTG 49871 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||| || || ||||| || ||||| || |||| ||||||||| | || || Sbjct 50772 CGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGTG 50713 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || || ||||| ||||||||||| || ||| ||| ||| Sbjct 50712 CGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCT 50653 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||||||| |||| ||||| | | || || |||| Sbjct 50652 TCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGT 50593 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || || || || Sbjct 50592 GTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTG 50555 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||| ||||| || || || ||||| || |||| ||||||||| | || || Sbjct 51000 CGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTG 50941 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || || || |||||||||||||||||||||||||| || ||| || Sbjct 50940 CGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCC 50881 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || |||||| ||| ||| ||||| ||| || | | || || || | Sbjct 50880 TCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGG 50821 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || ||||| ||||| Sbjct 50820 GTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTG 50783 Score = 111 bits (122), Expect = 4e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | || || | |||||| Sbjct 50535 AGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCT 50476 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| | ||||||||| ||||| || ||||| ||| Sbjct 50475 TCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCC 50416 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || ||| | ||||| | | || || |||| |||||| || Sbjct 50415 TGGAT-TTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGT 50357 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || || || Sbjct 50356 TTTGCCGGTGAGGGTTTTGACGAAGATCTG 50327 >seq368444 Length=413118 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || ||||||||||| |||| ||||||||| | || || | ||||| Sbjct 77713 CAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATC 77772 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || || ||||| |||||||||||||| || Sbjct 77773 CTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCAGG 77814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173340448095964