Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq118272 147 2e-30 seq368444 84.2 2e-11 >seq118272 Length=246527 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||| ||||| || | || |||||| || || |||||||||| Sbjct 49868 TGCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 49809 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| |||| || ||||||||||||||||| |||| || |||||||||| || Sbjct 49808 ACAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCG 49749 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| ||||| ||| | | | | ||||||||||| |||| Sbjct 49748 GGATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCA 49689 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||||||| || ||||| ||||| || ||||| ||||| Sbjct 49688 CCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | ||| ||| || ||||| |||||||| || || ||||| | Sbjct 50766 CGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGACCA 50707 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||| || || |||| |||||||| |||| || | | |||||| Sbjct 50706 TCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTG 50647 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| || ||| ||| | || | | |||||| || | ||||| |||| ||||| Sbjct 50646 TCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATA 50587 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || ||||| ||||| ||||| Sbjct 50586 GTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||| | || ||| || ||||| |||||||| || || ||||| || Sbjct 50994 CGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCG 50935 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| || ||||||||||| || | ||||||||||| | || | || ||||||| Sbjct 50934 TCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTG 50875 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| | | | || || || | || || || | |||||| Sbjct 50874 TCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATG 50815 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||||||||| Sbjct 50814 GTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| || | || ||| || ||||| |||||||||| Sbjct 50096 TGCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGG 50037 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || |||| ||||| |||||||||||||| |||| |||||||| || | | Sbjct 50036 AGAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGG 49977 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| ||| || ||| | | | | ||||||||||| || | Sbjct 49976 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAA 49917 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||| || ||||| || || || || ||||| || ||||| Sbjct 49916 CCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || ||||| |||||||||||||| Sbjct 50515 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAA 50456 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | ||||||||| ||| || |||| | Sbjct 50455 GATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATT 50396 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || | || || |||| ||||||||||||||| || || ||||| || Sbjct 50395 TTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGAC 50336 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 50335 GAAGATCTGCAT 50324 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| ||||| || || || | || || | |||||| || || || Sbjct 51427 CTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGCTTTCCAGCAAA 51368 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || ||||||||| |||||| ||||| | Sbjct 51367 GATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 51308 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| | || || |||| |||||||| || |||||||| || || || Sbjct 51307 CTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCAC 51248 Query 46582 AAAGATTTGCATT 46594 |||||||||||| Sbjct 51247 GAAGATTTGCATT 51235 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| || | || ||| || ||||||||||| || | Sbjct 50324 TGCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCG 50265 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || ||||||||||||||||| || |||| |||||||| |||| | Sbjct 50264 ACAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAG 50205 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| || || ||| | || | | |||||||| | |||| Sbjct 50204 GAATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCA 50145 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 50144 CCTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||| || || || || |||| || |||||||||||||| || Sbjct 51198 TCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAG 51139 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | | ||||||||| |||||| || | | Sbjct 51138 ATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTT 51079 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | || || || | || ||||| ||||| ||||| ||||| ||| Sbjct 51078 TCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACA 51019 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 51018 AAAATTTGCAT 51008 >seq368444 Length=413118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| |||||| || | || |||||| ||||| |||||||| || || |||||| Sbjct 77708 AAGCGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGC 77767 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | || || ||||||||||| || || |||| ||||||||||| Sbjct 77768 CCATCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTC 77811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562627761663840