Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq118272 96.9 2e-15 >seq118272 Length=246527 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| |||||| |||| || | ||| ||||| || ||||| ||||| | Sbjct 50323 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGA 50264 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| || | || || ||| |||| || | |||||||||||| | || Sbjct 50263 CAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGG 50204 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCC 39669 | |||||| ||||| ||||| || | || | | ||||| ||| || ||| Sbjct 50203 AATGCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGC--TCC 50146 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| || ||||| ||||| || | ||||| ||||||||||||||| Sbjct 50145 ACCTCCAGTGTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345805330862036