Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq297272 176 4e-39 seq118272 140 3e-28 seq368444 102 8e-17 >seq297272 Length=244611 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||| ||||||||||||||||||||||| ||||| || | ||| |||| Sbjct 160727 ACCAGGTTCTCGTTAACGATGCCGTCGCTGGCGGCGAAGAAGGCAAGGATGTGGGAGATG 160668 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || || ||||| | | || | | ||||||| | | ||||||| |||||||||| Sbjct 160667 AAGTGCCGCTCCTCGGGCTTGAGCCCGTCCCAGTGGGGGAGGTCCTTGCCCAGGTCCACC 160608 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATAT 133458 ||||| || ||||| || || |||||||| || |||||||| | ||| |||||| ||| Sbjct 160607 TCCTCCACAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATGCGCCAGATGTCCTCATAC 160548 Query 133459 TGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || ||||| || || || || |||||||| ||||||| ||||||||| Sbjct 160547 ACGATCGGAAACATGACGAAGCGCCGGGGGTTCTCGCGCAGCAGCGGCTC 160498 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||| ||||| ||||||||||| || | |||||||||||| || || || | Sbjct 163573 CCTCGTCCCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 163514 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| ||||| ||||| ||||||| |||||||||||| || || | Sbjct 163513 TCAGCCAGAAGATGGATGCGAACGATCCCGAGAAGAAGATGCCCTCGACGGCTGCAAACG 163454 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC-GATCCAGCGCAGCGCCCATTCG 133095 | || | ||||||||| || ||||| || | | || ||||||| || ||||| || Sbjct 163453 CGACGATGCGCTCGCCAAATGTGGC-GCTGCGGTTGCTGATCCAGTTTAGTGCCCAGTCC 163395 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 ||||| || | ||| |||||||| || | |||||| || | |||| Sbjct 163394 GCCTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAATAGACGG 163347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 162488 GTAAGTGTCGATGAGGAGGCTGTACATCTCGGAGTGCACATTCTCGATAGCCATTTGGAA 162429 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||| ||||| |||||||| |||||| || || ||| ||||||||| ||| Sbjct 162428 GCCGTAGAAGCAGCGCGCCTCCGTCACCTGGACCTCCTGACTGAAACGCTCCACC 162374 >seq118272 Length=246527 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || || || ||||| ||||||||| |||| || ||| ||| Sbjct 50780 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGT 50839 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| | || | ||| |||| ||||| ||||| ||||| | ||||| Sbjct 50840 GATACCATCGAAAACG-TCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 50898 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| |||||||| || || |||| ||||| || |||||||| Sbjct 50899 GCAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAA 50958 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || || ||| | |||||||| Sbjct 50959 CATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCG 50994 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || || ||||| ||||| || |||| |||||| ||| Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | |||| || |||| ||||| || || ||||| | ||||| Sbjct 51068 GACACCATCGAAAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCA 51126 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || ||||| ||||| || |||| || ||||| |||||||| Sbjct 51127 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAA 51186 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| | || || || |||| ||||| Sbjct 51187 CATCCAGAAAGAATCCACCCTCCACCTGGTTCTGCG 51222 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || || ||||| || ||||||||| | || |||||| ||| Sbjct 51235 AATGCAAATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 51294 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || |||| ||||| || || |||||| | |||| Sbjct 51295 CGACACCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACC 51353 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || || ||| |||| || | || ||||| ||| |||| Sbjct 51354 AGCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACCCTGTCCGATTACA 51413 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||||||| | || || || | || |||||| | | || |||| Sbjct 51414 ACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCCGTGGTGGCC 51464 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| || ||||| |||| || ||| | | | Sbjct 49868 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 49927 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||||||| ||||| |||||||| ||| | || || Sbjct 49928 GACACGATCGAAAACG-TGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCGGATCA 49986 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| || || || |||| || |||||| ||||||||| Sbjct 49987 GCAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGTACCCTCTCCGACTACAA 50046 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || |||| |||||| || | || ||| Sbjct 50047 CATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGGC 50095 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || ||||||||||| |||| || ||| | | | Sbjct 49640 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 49699 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | || | || || | ||||| ||||| || || ||||||| Sbjct 49700 GACACGATTGAAAACG-TGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCCCGACCA 49758 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| ||||| ||||| || |||| |||||| | ||||||||| Sbjct 49759 GCAACGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCACCTTGTCCGACTACAA 49818 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| | || || || |||| ||||| || | || ||| Sbjct 49819 CATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGGC 49867 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| |||||||||||||| | || |||||| ||| Sbjct 50324 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAGT 50383 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| ||||||| ||||| || || || ||| | || || Sbjct 50384 GACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCAG 50443 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| || || || || | |||||||| ||||||||| Sbjct 50444 CAGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAAC 50503 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || ||||| || || Sbjct 50504 ATCCAGAAGGAGTCCACCCTACACTTGGTTCTCCG 50538 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | || || ||| ||| Sbjct 50552 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATCACACTGGAGGTGGAGCCCAGT 50611 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||| | ||||| || || ||||| |||| || Sbjct 50612 GACACGATCGAGAACG-TGAAGGCGAAAATTCAGGACAAGGAAGGTATTCCTCCCGATCA 50670 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | |||||||| |||||||| Sbjct 50671 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACCCTGTCGGACTACAA 50730 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || ||| |||||||||| || | || ||| Sbjct 50731 CATCCAGAAAGAGTCTACCCTCCATCTGGTGCTGCGACTGCGTGGTGGC 50779 >seq368444 Length=413118 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | |||||||| |||||||| || | |||| Sbjct 77823 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGGCGC 77764 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| |||| || || |||||||||| ||| | Sbjct 77763 ACCCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTACACCTGGTGCTGCGCTTGCGT 77704 Query 38466 GGCGGC 38471 |||||| Sbjct 77703 GGCGGC 77698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497862676897280