Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq165536 118 4e-21
seq104045 116 1e-20
seq285004 89.7 2e-12
>seq165536
Length=484117
Score = 118 bits (130), Expect = 4e-21
Identities = 224/331 (68%), Gaps = 9/331 (3%)
Strand=Plus/Minus
Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333
|||||||||||||| || || ||| | || ||| || | |||||||||||
Sbjct 103534 AAAATGAAAGAAACTGCCGAGAGTTATTTAGGGGAAAAAGTAACACAAGCAGTAATTACC 103475
Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393
|| || |||||||| |||||||||| || |||||||| |||||||| || | || ||
Sbjct 103474 GTACCTGCTTATTTTGATGATGCACAGCGTCAAGCAACGAAAGATGCCGGTAAAATAGCA 103415
Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453
||| | | || ||| |||| || || || || || || || ||||| || || || |
Sbjct 103414 GGTCTTGAGGTCCTTAGAATAATCAACGAGCCGACTGCTGCAGCTCTTGCTTACGGTTTC 103355
Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513
| |||| | | | |||| |||| ||||| ||| |||| || |||||
Sbjct 103354 GAGAAAT---------CGGCAAGTAAAACTATTGCAGTATACGATCTTGGCGGCGGAACA 103304
Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573
||| ||| | ||| || | ||||| || |||||||| || |||| || ||
Sbjct 103303 TTCGATGTTTCAATTCTTGAGATCGCTGATGGTGTTTTTGAAGTGAAATCAACAAACGGC 103244
Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATA 451604
||||| || || ||||||||| | ||||
Sbjct 103243 GATACATTCCTTGGTGGTGAAGATTTCGATA 103213
>seq104045
Length=66510
Score = 116 bits (128), Expect = 1e-20
Identities = 225/330 (68%), Gaps = 3/330 (1%)
Strand=Plus/Minus
Query 451184 AATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCT 451243
|||||| ||| |||||| | || || | | |||||| || || | ||| |
Sbjct 25197 AATCAAGGAGGCAAGCCCAACATCAGCGTGGAGTTTAAAGGAGAGCGAAAGATTTTCAAT 25138
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
| ||||||||| | ||||| || || || |||||||||||||| || ||| |
Sbjct 25137 GCGGAAGAAATTAGTGCCATGGTGCTGACCAAGATGAAAGAAACAGCCGAGGCTTATCTC 25078
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
||| | | || | ||||| ||||| || || || ||||| ||||| || | || ||
Sbjct 25077 GGTAATGCCGTCAAAGATGCGGTAATCACCGTGCCTGCTTACTTCAACGACTCTCAGCGA 25018
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
|| || || ||||| || ||| |||||| || | || || ||||| || || |||||
Sbjct 25017 CAGGCCACGAAAGACGCCGGAGCTATTGCGGGCCTCAACGTACTTCGCATCATCAATGAG 24958
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483
|| || ||||| ||||| || || || || ||| || | ||| || || |||||
Sbjct 24957 CCCACCGCAGCCGCTCTTGCTTACGG-CTTGGACAAGAACCTGAA--AGGCGAGAAAAAC 24901
Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACT 451513
| || |||| || || |||||||| |||
Sbjct 24900 GTGCTAATATTCGACTTGGGTGGAGGCACT 24871
>seq285004
Length=64524
Score = 89.7 bits (98), Expect = 2e-12
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 451237 TTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACA 451296
||| || |||||||| || || | ||||| | || || ||||| ||||| || |||
Sbjct 20454 TTTCGCCCCTGAAGAGATCTCTGCCATGGTGTTGACCAAGATGAAGGAAACTGCTGAAGC 20513
Query 451297 ATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGC 451356
|| | || || || | || || | || || || || || ||||| |||||
Sbjct 20514 CTACCTGGGCAAGAAGGTGACCCACGCTGTCGTGACCGTGCCAGCCTACTTCAACGATGC 20573
Query 451357 ACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416
|| || ||||| || || ||||| ||| ||||||||| | ||||| | || || ||
Sbjct 20574 CCAGCGTCAAGCCACCAAGGATGCCGGAACCATTGCTGGTCTCAATGTGATGCGTATCAT 20633
Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGa 451476
|| ||||| ||||| ||||| | || || || || ||| || || || ||||||
Sbjct 20634 CAACGAACCCACAGCTGCTGCCATTGCCTACGGTCT-GGACAAGAAAGAGGGCGAGAAGA 20692
Query 451477 aaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT 451536
| | || | || || || || || |||||||| || || | || | ||
Sbjct 20693 ACA-----TTCTTGTCTTCGACTTGGGAGGAGGAACCTTCGACGTGTCCCTTCTCACCAT 20747
Query 451537 TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGG 451587
|| | || || ||||| || | ||||||||||| |||||||| ||
Sbjct 20748 CGACAACGGCGTCTTTGAGGTTGTCTCTACCAATGGTGACACTCATCTTGG 20798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1966365119417136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |