Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq165536 118 4e-21 seq104045 116 1e-20 seq285004 89.7 2e-12 >seq165536 Length=484117 Score = 118 bits (130), Expect = 4e-21 Identities = 224/331 (68%), Gaps = 9/331 (3%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||||||||| || || ||| | || ||| || | ||||||||||| Sbjct 103534 AAAATGAAAGAAACTGCCGAGAGTTATTTAGGGGAAAAAGTAACACAAGCAGTAATTACC 103475 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || |||||||| |||||||||| || |||||||| |||||||| || | || || Sbjct 103474 GTACCTGCTTATTTTGATGATGCACAGCGTCAAGCAACGAAAGATGCCGGTAAAATAGCA 103415 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||| | | || ||| |||| || || || || || || || ||||| || || || | Sbjct 103414 GGTCTTGAGGTCCTTAGAATAATCAACGAGCCGACTGCTGCAGCTCTTGCTTACGGTTTC 103355 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | |||| | | | |||| |||| ||||| ||| |||| || ||||| Sbjct 103354 GAGAAAT---------CGGCAAGTAAAACTATTGCAGTATACGATCTTGGCGGCGGAACA 103304 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| ||| | ||| || | ||||| || |||||||| || |||| || || Sbjct 103303 TTCGATGTTTCAATTCTTGAGATCGCTGATGGTGTTTTTGAAGTGAAATCAACAAACGGC 103244 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||||| || || ||||||||| | |||| Sbjct 103243 GATACATTCCTTGGTGGTGAAGATTTCGATA 103213 >seq104045 Length=66510 Score = 116 bits (128), Expect = 1e-20 Identities = 225/330 (68%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 451184 AATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCT 451243 |||||| ||| |||||| | || || | | |||||| || || | ||| | Sbjct 25197 AATCAAGGAGGCAAGCCCAACATCAGCGTGGAGTTTAAAGGAGAGCGAAAGATTTTCAAT 25138 Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 | ||||||||| | ||||| || || || |||||||||||||| || ||| | Sbjct 25137 GCGGAAGAAATTAGTGCCATGGTGCTGACCAAGATGAAAGAAACAGCCGAGGCTTATCTC 25078 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 ||| | | || | ||||| ||||| || || || ||||| ||||| || | || || Sbjct 25077 GGTAATGCCGTCAAAGATGCGGTAATCACCGTGCCTGCTTACTTCAACGACTCTCAGCGA 25018 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || ||||| || ||| |||||| || | || || ||||| || || ||||| Sbjct 25017 CAGGCCACGAAAGACGCCGGAGCTATTGCGGGCCTCAACGTACTTCGCATCATCAATGAG 24958 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || || ||||| ||||| || || || || ||| || | ||| || || ||||| Sbjct 24957 CCCACCGCAGCCGCTCTTGCTTACGG-CTTGGACAAGAACCTGAA--AGGCGAGAAAAAC 24901 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | || |||| || || |||||||| ||| Sbjct 24900 GTGCTAATATTCGACTTGGGTGGAGGCACT 24871 >seq285004 Length=64524 Score = 89.7 bits (98), Expect = 2e-12 Identities = 231/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 451237 TTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACA 451296 ||| || |||||||| || || | ||||| | || || ||||| ||||| || ||| Sbjct 20454 TTTCGCCCCTGAAGAGATCTCTGCCATGGTGTTGACCAAGATGAAGGAAACTGCTGAAGC 20513 Query 451297 ATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGC 451356 || | || || || | || || | || || || || || ||||| ||||| Sbjct 20514 CTACCTGGGCAAGAAGGTGACCCACGCTGTCGTGACCGTGCCAGCCTACTTCAACGATGC 20573 Query 451357 ACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416 || || ||||| || || ||||| ||| ||||||||| | ||||| | || || || Sbjct 20574 CCAGCGTCAAGCCACCAAGGATGCCGGAACCATTGCTGGTCTCAATGTGATGCGTATCAT 20633 Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGa 451476 || ||||| ||||| ||||| | || || || || ||| || || || |||||| Sbjct 20634 CAACGAACCCACAGCTGCTGCCATTGCCTACGGTCT-GGACAAGAAAGAGGGCGAGAAGA 20692 Query 451477 aaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT 451536 | | || | || || || || || |||||||| || || | || | || Sbjct 20693 ACA-----TTCTTGTCTTCGACTTGGGAGGAGGAACCTTCGACGTGTCCCTTCTCACCAT 20747 Query 451537 TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGG 451587 || | || || ||||| || | ||||||||||| |||||||| || Sbjct 20748 CGACAACGGCGTCTTTGAGGTTGTCTCTACCAATGGTGACACTCATCTTGG 20798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1966365119417136