Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq104045 178 1e-38 seq165536 114 1e-19 seq285004 89.7 4e-12 >seq104045 Length=66510 Score = 178 bits (196), Expect = 1e-38 Identities = 708/1096 (65%), Gaps = 25/1096 (2%) Strand=Plus/Plus Query 517271 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 517330 || || || |||||||||| || || || || | ||| || || || ||||| | || Sbjct 24023 AGGATGCCGTTGGCATCCAGGTCGAAGGTCACCTGAATCTGGGGCACTCCTCTTGGTGCC 24082 Query 517331 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 517390 |||||||| || || | ||| || ||||| | || || ||||| | || Sbjct 24083 GGTGGGATGCCCATCAGGTCAAAAGTGCCCAGGAGGTGGTTGTCCTTAGTCATGGCCCGC 24142 Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 || || ||||| | ||| || || || ||||||| || |||| || || || ||| Sbjct 24143 TCGCCTTCGAACACTTGAATGGTGACGCCAGTTTGGTTGTCTGCGTACGTCGTGAATGTC 24202 Query 517451 CTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCT 517510 ||||| | || ||||| || |||| | || | ||| || | ||| | ||||||| Sbjct 24203 TTGGATGTCTTGCAAGGTATGCGGCTGTTACGCTCTACAATCTTTGCCATTACACCACCT 24262 Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570 || ||||| | || || |||||||| | || || || || | | | | | | Sbjct 24263 GCGGTTTCGATTCCCAGTGAAAGAGGGGCAACGTCGACGAGCAACACGTCCTTGATAATA 24322 Query 517571 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 ||| || | || ||||||||||||||||| || || || || |||||||||||| Sbjct 24323 TCACTCGTGTCTCCTGTTAGAATAGCTGCTTGAATCGCTGCTCCGTAAGCAACAGCTTCA 24382 Query 517631 TCAGGATTAACAGTTTCAT--TTAGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTG 517686 || ||||| | | ||| ||| | ||||||||||| || | ||| || || | Sbjct 24383 TCGGGATTGATGG--ACATGGCTAGGTCCTTACCATTGAAGAAGTCCTTG--AGTAGCT- 24437 Query 517687 TCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 517745 ||| | | | || || || | ||||| || || | || || ||||| | || || | Sbjct 24438 TCTGAATTCTTGGGATGCGCGTAGATCCGCCCACCAGCACGATCTCATGTATTTGAGACT 24497 Query 517746 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT-CAAGACCCGCTCTAAACAAG 517804 | | || ||||| ||| | |||| || || |||| |||| | | || | | Sbjct 24498 TTCCGAGCTTTGAGTCCTGGAGTGCTTTCTCTACAGGTTCCAAGGTAC-TGCGGAATAGG 24556 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTC 517863 || ||| | ||||||||| | ||||| || | || | || || |||||||| || Sbjct 24557 TCCATACACATTTCTTCGAACCTGGCTCTTGTGATTTTG-CTGTAGAAGTCAATTCCATC 24615 Query 517864 GAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 517923 || | | || | |||||| | | || || || |||| || || ||||| Sbjct 24616 AAAGAGTGCGTCGATTTCAATGCTGGCTTCTGTGCTGCTCGAGAGTGTTCGCTTTGCACG 24675 Query 517924 TTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATCTGTTTTAT 517982 ||| || || || || || | || | |||| | | || ||| |||| || || | Sbjct 24676 TTCGCAAGCAGTTCTCAGGCGTCTGATGGCTCTCG-TGTTTGTTTTCAGGTCACGCTTGT 24734 Query 517983 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 518042 ||| || |||| ||||| || | | | || || || ||||| || ||||| || | Sbjct 24735 GTTTCCTTGTGAACTCTTCGACGAAGTAGTTCACCAGCCGGTTATCGAAGTCTTCCCCCC 24794 Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCAAGAGACA 518099 | | | || | ||||| || | | || | ||| | | || || |||| || | Sbjct 24795 CGAGATGCGTGTCTCCTGCTGTGGAGCGAACCTCGAACATTGAACCCTCGTCAATAGTGA 24854 Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159 || | ||||| || || ||||||| || || || || || || |||| | | Sbjct 24855 GAATGGACACATCGAAAGTGCCTCCACCCAAGTCGAATATTAGCACGTT--TTTC-TCGC 24911 Query 518160 CTT---GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 ||| |||| || || | || || |||| ||| || || || || ||||| || || | Sbjct 24912 CTTTCAGGTTCTTGTCCAAGCCGTAAGCAAGAGCGGCTGCGGTGGGCTCATTGATGATGC 24971 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 | || || || || ||||| ||| || ||||| ||||| |||| || || |||| Sbjct 24972 GAAGTACGTTGAGGCCCGCAATAGCTCCGGCGTCTTTCGTGGCCTGTCGCTGAGAGTCGT 25031 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 | || || ||||| || || || || ||||| | || | ||||| | |||||| | Sbjct 25032 TGAAGTAAGCAGGCACGGTGATTACCGCATCTTTGACGGCATTACCGAGATAAGCCTCGG 25091 Query 518337 CCGTTTGTTTCATTTT 518352 | |||| |||||| || Sbjct 25092 CTGTTTCTTTCATCTT 25107 >seq165536 Length=484117 Score = 114 bits (126), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 |||||||| ||||||||||| ||||| || || || |||||| |||| || || | ||| Sbjct 103356 AAACCGTAAGCAAGAGCTGCAGCAGTCGGCTCGTTGATTATTCTAAGGACCTCAAGACCT 103415 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 || |||||| | | ||| |||||||| | |||||| |||| |||||| || ||||| Sbjct 103416 GCTATTTTACCGGCATCTTTCGTTGCTTGACGCTGTGCATCATCAAAATAAGCAGGTACG 103475 Query 322361 GTAATAACTGCTT 322373 ||||| ||||||| Sbjct 103476 GTAATTACTGCTT 103488 >seq285004 Length=64524 Score = 89.7 bits (98), Expect = 4e-12 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 518175 |||||| || |||| || || | ||| | ||| | || |||| | || || || Sbjct 20724 GGTTCCTCCTCCCAAGTCGAAGACAAGAATGTTCTTCTCGCCCTCTT---TCTTGTCCAG 20668 Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 ||| || |||| |||||||| || ||||| || || || | || ||||| |||||||| Sbjct 20667 ACCGTAGGCAATGGCAGCAGCTGTGGGTTCGTTGATGATACGCATCACATTGAGACCAGC 20608 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 ||| |||| ||||| || |||||||| | || | |||||| || || || || || || Sbjct 20607 AATGGTTCCGGCATCCTTGGTGGCTTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGT 20548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3762486989853352