Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq297272 89.7 6e-13 seq336791 84.2 3e-11 >seq297272 Length=244611 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||| ||||| || |||| ||||| || ||||| ||||||||||| || || ||| Sbjct 163435 TTTGGCGAGCGCATCGTCGCGTTTGCAGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTC 163494 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | || | ||||| |||||||| || |||||||| || ||| |||| ||||||| Sbjct 163495 GCATCCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAG 163554 Query 102294 CTTATCTCTCGTGACGAGG 102312 || ||| ||| ||||||| Sbjct 163555 CTCATCAGTCGGGACGAGG 163573 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 102537 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 102596 ||||| |||| || || |||||||||||| ||||| | | || ||||||||||||||| Sbjct 164981 AACTCGGAGAACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTC 165040 Query 102597 TTCGAAAAGAGGGTTGGGGACTAT 102620 || || |||||||||||||| ||| Sbjct 165041 TTTGAGAAGAGGGTTGGGGAGTAT 165064 >seq336791 Length=793321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/370 (66%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| | ||| || || || | || |||||| | |||| || || || || Sbjct 535531 ACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTTTGTAGC 535590 Query 15944 GGCGATGACAACAA-TACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || |||| |||| | ||| || | | ||||| || ||||| || || | |||| Sbjct 535591 TGCAATGATCACAACTCCCTCGTTTGCT-TCAAATCCGTCCATTTCGACTAACATTTGGT 535649 Query 16003 TAATAGTTTGTTCCCGTTCATCATT--CGCTG-GCATACCACCAGCACTGCGTTGCTTTC 16059 | | ||||| || ||||||||||| ||| | |||||| | | || || | Sbjct 535650 TTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCTCT---ATGGCGAC 535706 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 |||| |||||||| ||||| || || | || || || ||| | | ||||| Sbjct 535707 CCACCGCATCAATTTCATCGATAAAAATAATACAAGGAGCATTACGTTTACCCTGTTCAA 535766 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | | | || ||||| | || || ||||| |||||||| || ||||| | | | ||| Sbjct 535767 ACATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAACAAAATCAGAGCCGG 535826 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | | | || || ||||||| ||||| ||||| ||| || ||||| ||||||| Sbjct 535827 ATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGCAAGAAGTGTCTTAC 535886 Query 16240 CCGTACCTGG 16249 | || || || Sbjct 535887 CGGTTCCAGG 535896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617875408114240