Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq16628 131 2e-25 seq297272 87.8 2e-12 seq102143 82.4 9e-11 >seq16628 Length=231947 Score = 131 bits (144), Expect = 2e-25 Identities = 556/867 (64%), Gaps = 31/867 (4%) Strand=Plus/Plus Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 |||||| ||||| | ||| ||||| | | |||||| | ||||| || | ||||| Sbjct 199520 AGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGACGTGTACTCTACGATTTC 199579 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 ||||| | || || || || ||| | ||| || ||||||||||| ||||| Sbjct 199580 GGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATTTTCTATTGCA 199639 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 || || || || | ||| ||||| |||||||||||||| ||||| | || ||| || | Sbjct 199640 GGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTCGATAATTGCACT 199699 Query 110466 CCATACATCGGCGGCGGGGACAGTTG----CGTTAGCGAGACCTTCCTCCTCGTACTTGG 110521 ||| | | || | || ||| || || || | ||| |||||| Sbjct 199700 CCAGAGTTGTTGTGCACGAAC--TTGACGCCGATAACGTTTC--TCCGTCTCGTATCGAA 199755 Query 110522 TGTACAAGTCCTCAAATTCCTGTCCGTACACATC-----AGAAAGACCCTTCGCCTTGTC 110576 ||| | | || || || | ||||| ||||| | || | |||| ||| Sbjct 199756 CGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACTTTCG---TGT- 199811 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 ||||| | | ||||| ||||| | || || ||||| |||||||| | || ||||| Sbjct 199812 -GGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTTCATGAATAAATCGGGAAT 199870 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||||| | | ||||| ||||| | | |||||| | ||| || ||| Sbjct 199871 CCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTTTTTTTAG 199930 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC--- 110753 |||||||| || | | ||| | |||||| ||||| ||||||| ||||| | ||| Sbjct 199931 ATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCGCTCCCGG 199990 Query 110754 -CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 ||| | | || |||| | || || ||||| ||| || | || | ||||| | Sbjct 199991 TCTTTTGTTG-CCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATGG 200049 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACC-CCTAATTCTGGACTT--ATTGGCACGAA 110869 | | ||| || | ||| ||||||||| || ||| | |||| | ||||||| Sbjct 200050 GTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGT---AACTTCCAGAAGCACGAA 200106 Query 110870 TGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGA 110929 ||| ||| || | || || || ||||| ||| | || ||| ||||||||| | | | Sbjct 200107 TGTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCA 200166 Query 110930 GTGTACCATAAATACCATCAATCGAATCTGCCTT-GTTGGCAATTAGAAAGCAAGAAGAC 110988 ||||| | || || || || || ||| | || || |||| || ||| ||| ||| Sbjct 200167 GTGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAA-TAAAAAACAACTCGAC 200225 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT 111048 | || || ||| || || || ||||| ||||| || | || || | ||| | Sbjct 200226 AGTTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTT 200285 Query 111049 TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATG 111108 | ||||| |||||| || || | || | | ||| | |||||||| ||||| Sbjct 200286 TCAGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGAATGCCAATC 200345 Query 111109 GCAACTCGCATGAACATATATTGAGGC 111135 | ||| ||||| | ||| | ||| ||| Sbjct 200346 GAAACGCGCATAAGCATGTGTTGTGGC 200372 >seq297272 Length=244611 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 || |||||| ||||||||| || |||||| || || ||||||||||| | ||||| Sbjct 163571 TCGTCCCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTC 163512 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCG 119636 ||||| ||||||| || ||| || |||||||||||||| || || || ||| Sbjct 163511 AGCCAGAAGATGGATGCGAACGATCCCGAGAAGAAGATGCCCTCGACGGCTGCAAACGCG 163452 Query 119637 AATAGACGCTCAGCAAAAG-GTCGAGAC--TTGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 | | ||||| |||| | | || | ||| || ||| || || ||||||| ||| Sbjct 163451 ACGATGCGCTCGCCAAATGTGGCGCTGCGGTTGCTGATCCAGTTTAGTGCCCAGTCCGCC 163392 Query 119694 TTACGCTCTATGCAGGG 119710 || | || |||||||| Sbjct 163391 TTCCTCTTAATGCAGGG 163375 >seq102143 Length=1155 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 136708 CCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCG 136767 ||| ||| ||||||||||||||||||||| ||||| ||||||| |||||||| |||||| Sbjct 652 CCGGTCTGCTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCG 711 Query 136768 AGCCCCGT 136775 | ||| || Sbjct 712 ATCCCTGT 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586255725997600