Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq118272 156 9e-33 >seq118272 Length=246527 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||||||||| || ||||||||||| | || |||| ||||||||| Sbjct 50304 ACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGGCCATCTTCG 50245 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || || || |||||||||||||| ||||| ||| Sbjct 50244 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGA 50185 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| |||||||| || ||||| ||||| || || || | ||||| Sbjct 50184 ATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGATTGTCTTA 50125 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 50124 CCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| ||||| || |||||||||| || |||| |||||||| Sbjct 51444 ACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCC 51385 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || || || ||||| || ||||||||||| ||||| || Sbjct 51384 AACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 51325 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| || || || ||||| | ||||| Sbjct 51324 ATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTC 51265 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| || || ||||| | ||||||| Sbjct 51264 CCCGTCAGGGTCTTCACGAAGATTTGCATT 51235 Score = 143 bits (158), Expect = 6e-29 Identities = 165/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || ||||| ||||| ||||||||||| || || ||||| || | || || | Sbjct 50997 AGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGG 50938 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||| || || || |||||||| || || || ||||| || |||||||| || Sbjct 50937 CCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCC 50878 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 |||||||| || ||| ||||||||| || ||||| || ||| || ||||| ||| Sbjct 50877 TTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATC---ACTGGGCTCAACTTCGAGG 50821 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| ||| ||||| || | |||||| Sbjct 50820 GTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 134 bits (148), Expect = 3e-26 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || || || || || |||||||| || || ||||| || | || || | Sbjct 50769 AGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGA 50710 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||||||||||||| || || ||||| || || || || || |||||||| ||||| Sbjct 50709 CCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCC 50650 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 ||||| |||||||| ||| |||||||| || ||||| ||| ||||| || || Sbjct 50649 TTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTC---ACTGGGCTCCACCTCCAGT 50593 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| ||| || ||||| | ||||| Sbjct 50592 GTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || ||||| || |||||||| || ||||| ||||| |||| |||| || | || ||||| Sbjct 49848 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAG-GTGCGTCCGTCTTC 49790 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || ||||| ||||| || || || || || |||||||| Sbjct 49789 AAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTTGTCTTG 49730 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| ||||| ||||| ||||| || || || | || || Sbjct 49729 AATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGCGTGATGGTTTT 49670 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||| ||||| | ||||| Sbjct 49669 CCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||||||||| || || ||||| |||| || || | || || ||| Sbjct 50076 ACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 50017 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || || || || || || || || || || ||||| || Sbjct 50016 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGG 49957 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| ||| ||||| || || ||||| Sbjct 49956 ATTTTGGCCTTCACGTTTTCGATCGTGTC 49928 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 50533 AACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 50474 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| | || || || || || || || ||||| ||||| || Sbjct 50473 GAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTG 50414 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||||| ||||| || ||||| ||||| ||| || ||||| || || | || Sbjct 50413 GATTTTGGCTTTGACATTTTCAATTGTGTC---ACTGGGCTCGACTTCCAGCGTGATGGT 50357 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 50356 TTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1104229185128364