Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq118272 122 6e-23 >seq118272 Length=246527 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || || || |||| ||| | ||| || ||||||||||| ||||| || Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | ||| | || || ||||| || ||||| || || || ||||||||||| |||| Sbjct 49806 AAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 49747 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| |||||| || ||| | | |||| || | | ||| || Sbjct 49746 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACC 49687 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || |||||||| || || || || || || ||||||||||| Sbjct 49686 TCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | || | || || || ||||| ||||| || Sbjct 50970 TCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAG 50911 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 50910 ATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTT 50851 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| |||| ||| ||||| || || || |||||||| ||| Sbjct 50850 TCGATGGTATCACTGGGCTCAACTTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACA 50791 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 50790 AAGATTTGCAT 50780 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||||||| ||| | || |||| || ||||| || || ||||| Sbjct 50742 TCTTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAG 50683 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||| ||| || ||| Sbjct 50682 ATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTC 50623 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| |||| || ||| || || | || || || || || || |||||||| || Sbjct 50622 TCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATAGTCTTGCCGGTCAGAGTCTTAACG 50563 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 50562 AAGATCTGCAT 50552 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||| |||||||| ||| | || |||| || Sbjct 50533 AACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 50474 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || ||||| || || | || ||||| || | || | ||| |||||||| Sbjct 50473 GAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTG 50414 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || |||||| | | || | |||| || ||| || || | || |||||||| Sbjct 50413 GATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTT 50354 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || || ||||||||||| Sbjct 50353 GCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| |||||||| ||||| ||||| || ||| | || | || || Sbjct 50076 ACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 50017 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || || ||||| || | || | ||||||||||| Sbjct 50016 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGG 49957 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | | |||| || | | |||||| |||| || || || || Sbjct 49956 ATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTG 49897 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| ||||| |||||||| Sbjct 49896 CCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| |||||||| || || || ||||| ||| |||| |||| || Sbjct 50304 ACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGGCCATCTTCG 50245 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||| || | || | || |||||||| | Sbjct 50244 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGA 50185 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || ||| | || | || | || ||| || || | || || || || Sbjct 50184 ATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGATTGTCTTA 50125 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || || ||||||||||| Sbjct 50124 CCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323171715247776