Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq16628 430 1e-115 >seq16628 Length=231947 Score = 430 bits (476), Expect = 1e-115 Identities = 1444/2233 (65%), Gaps = 65/2233 (3%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| ||||| ||||| | || | ||| || | ||| ||||||||||||||||| || Sbjct 198614 TTTGTCCACTGTAAATTGGATGGCATTTACAGCAGGTTTGGTTCGTAAATAATACATTCC 198673 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | || | |||| ||| | ||||||||||| || | ||| ||| | || Sbjct 198674 AGTTTTCAGTCCAAGTTTCCAACCACAAAAATGCATACTTGTAAGTTTTCCATACGTTGG 198733 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 | | || || ||||| || |||||||| || || | || || || | ||| || | Sbjct 198734 CTGAGCGATGTGTATATTCAGTGATTGACTTTGGTCCACGAAAGCTCCGCGATCTGCCGA 198793 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATA-AATTTGTTTAATGT 47211 ||| || |||||| | | || | || ||||| || || ||| || | |||||| | Sbjct 198794 CATTTCCAAAATATTCTTCTGAGAAATTTCCCACACAGTGCGATACAACATTTTTAAT-T 198852 Query 47212 CTTCTGGGAGATTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaatt 47271 ||| || | ||| ||||||| ||| || ||| | || | || |||||||| | Sbjct 198853 CTTTAGGTATATTCAGCTTTTGAACAGAACCATTGTTAGCAATCAGTTCATTTTTTAAGT 198912 Query 47272 catttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAA 47331 | ||| | | || || ||| || ||||| |||| || || |||| Sbjct 198913 TGTCGTTCCATAAACCGAGACGCGTCAAATCTTTCAAGAGATGGTGATTTACTATCTGAA 198972 Query 47332 ATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCAT 47391 |||||||||| ||||| | || |||| | ||| || || |||||||| || | || | Sbjct 198973 ATTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGTTCCATTGCCTCGT 199032 Query 47392 TATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTC 47451 |||| |||| ||| || ||||| |||||||| ||||| | ||| || | | ||||| | Sbjct 199033 TATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACGAGAAGACTATTGC 199092 Query 47452 TTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAA 47511 | |||| | ||| || ||||||||| || | ||| || Sbjct 199093 GGATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCCACAGGTTTGAAGGTG 199152 Query 47512 CAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTT 47571 |||||||| | ||| || ||||| ||||||| || ||| |||| || || | Sbjct 199153 TTACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTACGTCT 199212 Query 47572 TATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTG 47631 || ||||| | ||||| ||||||||||| ||||||| || | ||||||||||| Sbjct 199213 CGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATATTG 199272 Query 47632 TTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNN 47691 ||||||| ||||| | || | | | ||||| | || |||||| Sbjct 199273 TTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTAATA 199332 Query 47692 NNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAG 47751 || | || ||||| ||||| || || || ||||| || | ||| | || | Sbjct 199333 AAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGTTTG 199392 Query 47752 AAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNN 47811 ||| | ||||| || | |||||| | || | ||| || |||||||| | Sbjct 199393 AAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTCTAG 199452 Query 47812 NNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATAA-CAAAC 47870 | || | ||||| | |||||| || | || | |||| | || Sbjct 199453 TTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAAGT-GTCCATGATAAACGAAT 199511 Query 47871 CTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT--GGATTAGTATATT 47928 | ||| | || || || |||| |||||| || || ||||| | ||| || || | Sbjct 199512 CGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGAC--GTGTACT 199569 Query 47929 GTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATT 47986 || ||||| | ||||||||||| |||||| || ||||| | |||| ||||| ||| Sbjct 199570 CTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTGATTCGATT 199629 Query 47987 NNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTC 48046 | || || ||||| ||||| | |||| | || || |||||||| | || ||||| Sbjct 199630 TTC--TATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTGTGATTC 199687 Query 48047 AATGATAGATTTCCAAACA-GTCCTAGCCTTTA--TAACAGCTCTAGCTTTATTATCATG 48103 || || | |||| | || | || | | || | || | || | || Sbjct 199688 GATAATTGCACTCCAGAGTTGTTGT-GCACGAACTTGACGCCGATAACGTT--TCTCCGT 199744 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 |||||| | || | || || || || || || || |||| | | ||||| Sbjct 199745 CTCGTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTGCAGGTGAGGACT 199804 Query 48164 TTCATTAGGACACATCAATGACCA-ATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 ||| | ||||||||||| ||||| || | |||| | || || || |||| |||| || Sbjct 199805 TTCGTGTGGACACATCAACGACCATATTC-CATCTTCTTCCACCCTTTTCATGAATAAAT 199863 Query 48223 CTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 | || ||||| | | | ||| | ||| | | || ||||| || || |||| Sbjct 199864 CGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGGTATTTT 199923 Query 48283 TTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342 |||| || || | ||| || | | ||| || ||||| ||||| | ||| || || || Sbjct 199924 TTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGGCGATCG 199983 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 | || |||| ||| || || || ||||| | || | || || |||||||| |||| || Sbjct 199984 CTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTA 200043 Query 48403 ACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC 48462 ||| || |||||||| || ||| ||||||| ||||| | || ||||||||| ||| | Sbjct 200044 GCATGGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACTTCCAGAAGCAC 200103 Query 48463 TTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTT 48522 || || || ||| ||||| ||||| ||| ||| || || || |||||| ||| Sbjct 200104 GAATGTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTT 200163 Query 48523 TAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAG 48582 | || ||||| || ||||||||||| ||||| ||| |||| | |||| ||||||||| | Sbjct 200164 TCAGTGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCG 200223 Query 48583 ACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATT 48642 ||| |||||| | | ||| || | || || | ||| |||||||| || ||||||||| Sbjct 200224 ACAGTTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATT 200283 Query 48643 TCTCTGATAACAATTTATATGTTTCAAT--AACAGAATCTAT-ATCCCATTGATGTATAC 48699 | || || | | || || |||||||| || | || |||| ||| || | Sbjct 200284 TTTCAGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCCCCGTGA---ATGC 200340 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 | || || || ||||| | ||| | ||| || | || |||| ||| ||| || || | Sbjct 200341 CAATCGAAACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTTCCCATTAATCTTGA 200400 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATC 48817 | || | ||||||||| ||||| ||||| ||||| || ||||| ||| ||| Sbjct 200401 GTAAATGCGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGAAA--TCGCGATC 200458 Query 48818 ATTAATAATTGATGAATTT----ATTCT------TTCCTTATG--TTTATATACTACATC 48865 | || || || || ||| | ||| ||| | | | |||||| | | || Sbjct 200459 GTAAACGATGGACGAGTTTAAAAAATCTGCATTATTCATAACGATCTTATATGTTTCTTC 200518 Query 48866 ------CAT-----TACATTTT---TTGATATAATTGATTCCTTG-TAAAGATCTTCTAC 48910 ||| || ||||| || | | ||| | || || | ||| | Sbjct 200519 GCTAATCATGGGCGTAGATTTTCCGTTAGTTTCATTTACCATATGATATAAATCAGTCAT 200578 Query 48911 AACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGC 48970 || || ||||| | ||||| |||||||| || | |||||| || | | || || || Sbjct 200579 CACCTCGCTAAAAACCTTTTTCGTTTCTTTGTGTAAATTAGAAATGGCGAGTCGCGCTGC 200638 Query 48971 TAATATAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATA 49029 || || ||||| ||||| || | || || ||| || || ||||||||||||| Sbjct 200639 TAGAATGGCATAGTCTGGGTGTTTCGTAGT-CATCGTTGCAGCAGTTTCTGCTGCTAAAT 200697 Query 49030 TATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATAT 49089 |||| | ||| || ||||| |||| ||||| ||| || ||||| ||| || Sbjct 200698 TATCCAGTTCCACTGTCGTTACGCCTGGATATAATCCGACGATCACTTT--TTG-GGTAA 200754 Query 49090 TTAC---TGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATG 49146 |||| ||||||| ||| | | ||| |||||||| | ||| | || | ||| | Sbjct 200755 TTACACAGGGATCTACGAAATCTGTGTTCAGCCCATAACAAAGTTTACTAATGCGAGACG 200814 Query 49147 TAATTTTATCAAA 49159 | ||||| || || Sbjct 200815 TTATTTTGTCGAA 200827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559512616190880