Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq165536 131 1e-24 seq336791 129 5e-24 seq118272 102 7e-16 >seq165536 Length=484117 Score = 131 bits (144), Expect = 1e-24 Identities = 212/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 |||| ||||| |||||||| ||||| | ||||| |||| || | | || | | | Sbjct 102738 TAGACGTTACGCCTCTATCCCTTGGCATTGAAACTCTTGGTGGCGTATTTACAAGATTAA 102679 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATA 552420 | ||| | ||||||||||| ||| ||| ||| || ||||| || || | |||| Sbjct 102678 TAGATCGTAATACTACTATACCTACTAAGAAAAGTCAGGTATTCTCAACTGCTGACGATA 102619 Query 552421 ATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATA 552480 |||| ||| || || ||| | | || |||| ||| | || | | |||||||||| Sbjct 102618 ATCAGCATGCCGTAACTATTAGAGTATTCCAAGGTGAACGTGAAATGGCAAAAGATAATA 102559 Query 552481 ATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 | ||||||| |||||| | |||||||| |||||||| || | || | ||||||| Sbjct 102558 AATTACTTGGTCAGTTTAATCTCGAAGGTATACCTCCTGCACCAAGAGGTTTGCCGCAAA 102499 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAAT 552600 | ||||| || || || || ||||| || ||||| || |||| | ||| |||||| Sbjct 102498 TAGAAGTAACGTTTGACATTGATGCTAACGGAATAGTGCATGTTTCAGCTAAAGATAAAG 102439 Query 552601 CTAGC 552605 | ||| Sbjct 102438 CAAGC 102434 >seq336791 Length=793321 Score = 129 bits (142), Expect = 5e-24 Identities = 265/382 (69%), Gaps = 14/382 (4%) Strand=Plus/Plus Query 602493 TTGGATAAAAATTATGAACATATTTTAGTTCACACGGGTCAAAATTG-GAATAAACAATT 602551 || |||||| || | | || || |||||||||| |||||||||| | ||| |||| Sbjct 50049 TTTGATAAATATACTAATCACATCCTAGTTCACACCGGTCAAAATTATGCATATG-AATT 50107 Query 602552 ATATGATGTATTTTTTGAAGAACTTGAAATAAGAAAACCTGATTACTATTT-GAATATTG 602610 | || | || |||||||| || | | ||| |||||||| ||||| | || ||| | Sbjct 50108 AAATCAGGTTTTTTTTGATGATATGGGAATTAGAAAACCGGATTATTTCTTAGAA----G 50163 Query 602611 TAG--GAAAAAATTTAGGCGAA-TCTATGGGAAATATTATATCTAAGAGTT-ATGATTTA 602666 ||| | | | | | ||| || ||||| || |||||| | || |||| |||| || Sbjct 50164 TAGCGGCAGATAATACGGCAAAATCTATAGGGCTTATTAT-TGAAAAAGTTGATGAAATA 50222 Query 602667 TTATTGGAATTGAAACCTGATGGAGTACTAATATTAGGAGATACTAATAGTGCATTATCT 602726 | | || || || |||| || || | | || |||||||| | ||||| Sbjct 50223 CTTGAGAAAGAAAAGCCCGATGCCGTTTTATTTTACGGTGATACTAACTCTTGTTTATCG 50282 Query 602727 GCTATTTCAGCGAAAAGATTAAAAATACCAATTTTCCATATGGAAGCTGGTAATCGTTGT 602786 || ||| | || ||| | ||||| || || || ||||||||||| || ||||||||| Sbjct 50283 GCAATTGCCGCTAAACGCCATAAAATTCCGATCTTTCATATGGAAGCAGGAAATCGTTGT 50342 Query 602787 TTTGATCAATTGGTTCCTGAAGAAATTAATCGTAAATTAGTGGATCATATTAGTGATATT 602846 |||||||| || ||||||||||| || |||||| | | ||||||||||| || || Sbjct 50343 TTTGATCAGCGTGTACCTGAAGAAATAAACCGTAAAATCATTGATCATATTAGCGACGTT 50402 Query 602847 AA-TTTACCTTATACAGAACAT 602867 || |||| ||| || || ||| Sbjct 50403 AACATTACGTTA-ACCGAGCAT 50423 >seq118272 Length=246527 Score = 102 bits (112), Expect = 7e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || || |||||||| ||| | | ||| ||||||||||| | || |||| Sbjct 50313 AGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGG--ATATTGTAATCCGACAGGGTTC 50256 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| || || || |||||||| || || | |||||||| |||||||| |||| Sbjct 50255 GGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTT 50196 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || |||||||| || || ||| ||||| || || | | || || || Sbjct 50195 CCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTG-GGCTCCACCTCCAGT 50137 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || ||||| || || ||||| ||||| || ||||| Sbjct 50136 GTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || || || |||||||||||||| ||| | | ||| || ||||| || | || || | Sbjct 50997 AGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGG--ATGTTGTAGTCTGACAGCGTGC 50940 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || || |||||||| ||||| || || || | ||||| ||||| ||||| || | Sbjct 50939 GGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCT 50880 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 | || ||||| || ||| || || || || |||||| || | | |||||| | Sbjct 50879 CCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGG 50820 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || || ||||| || || || |||||||| Sbjct 50819 TGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4009755596631080