Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8286 105 5e-18 seq266908 96.9 3e-15 seq16628 96.9 3e-15 seq329878 95.1 1e-14 >seq8286 Length=1257 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868 |||||||| | ||||| | ||| || || || | |||| ||||| || || ||| | Sbjct 437 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 496 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | |||||||||| ||||| |||| ||| || || |||||||| ||| Sbjct 497 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 556 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | |||||||| | || | ||| || || |||||||||||||| | ||| Sbjct 557 ACACCCAATCCCATGTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCT 616 Query 29989 ACGTAAAACTG 29999 ||||| ||||| Sbjct 617 ACGTAGAACTG 627 >seq266908 Length=1092028 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868 |||| ||| | ||||| | ||| || || || | |||| ||||| || || ||| | Sbjct 125359 TCCATGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 125418 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | |||||||||| ||||| |||| ||| || || |||||||| ||| Sbjct 125419 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 125478 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | |||||||| | || | ||| || | |||||||||||||| | ||| Sbjct 125479 ACACCCAATCCCATGTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCT 125538 Query 29989 ACGTAAAACTG 29999 ||||| ||||| Sbjct 125539 ACGTAGAACTG 125549 >seq16628 Length=231947 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868 |||||||| | ||||| | ||| || || || | |||| ||||| || || ||| | Sbjct 230583 TCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 230642 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | |||||||||| ||||| |||| ||| || || |||||||| ||| Sbjct 230643 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 230702 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | ||||| || | || | ||| || | |||||||||||||| | ||| Sbjct 230703 ACACCCAATCCCATATCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCT 230762 Query 29989 ACGTAAAACTG 29999 ||||| ||||| Sbjct 230763 ACGTAGAACTG 230773 >seq329878 Length=295997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 29802 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCC 29861 ||||| |||||||| | ||||||| ||| ||||| ||||||||||| ||||| || || Sbjct 113623 CAGCG--TCCACGTGGTTGAGGTAGATGTGGGCGTCCCCCAGGGTGTGCACAAAGTCCCC 113566 Query 29862 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29921 || | |||||| || | |||| ||||| || ||||| | ||||||||| ||||| Sbjct 113565 GGGCCGTTTCCCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCAATGTT 113506 Query 29922 AAAGGGTACCCCGAGCCCC 29940 || || || || || ||| Sbjct 113505 GAAAGGCACGCCCAGGCCC 113487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406777519863716