Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq336791 100 5e-16 >seq336791 Length=793321 Score = 100 bits (110), Expect = 5e-16 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 23040 TGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGT 23099 ||| || ||||| |||||||| | ||| | |||| ||| || ||||| | ||| || Sbjct 488752 TGGAGTAGTATTAGAAAACTCTAAAGTTACATGTCCTTCCCACTCCGGTTCTAACGGAGT 488811 Query 23100 GACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATAC 23159 || ||||| || || ||||| | ||||| || || ||||||| || ||||||||||| Sbjct 488812 CACATTTACTATTATACCGCATCTTGCATAAGTGGACTTGCCGACACAAATAACTAATAC 488871 Query 23160 GTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCC-AGTGCGAAACTGTTCGGCGGAA 23218 |||||||| || || || | ||| || | |||| || || ||||| || || |||| Sbjct 488872 ATCACGCGGTATTTTAAAATATTCTATAGT-TCTGCCAAGGGCAAAACTATTAGGTGGAA 488930 Query 23219 TGAT 23222 | || Sbjct 488931 TAAT 488934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893447929319360