Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq118272 125 6e-24 >seq118272 Length=246527 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || ||||| || ||||||||||| | | |||| | |||| || | ||| Sbjct 50298 TGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGGCCATCTTCGAGCTGC 50239 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| |||||| |||||||| ||||||||||| || || |||||||| Sbjct 50238 TTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAATTTTG 50179 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| | ||||| || || |||| || || ||||| Sbjct 50178 GCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTGATTGTCTTACCGGTG 50119 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || ||||||||| Sbjct 50118 AGGGTTTTGACGAAGATCTGCATG 50095 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || ||||| || || || || || ||||| || | | || | | |||| || Sbjct 50533 AACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 50474 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || ||||||||||| ||||| || || || ||||| || || || Sbjct 50473 GAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTG 50414 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||| ||| |||| | |||||| | || ||||| || |||| ||||| Sbjct 50413 GATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTT 50354 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||| | ||||| || || ||||||||| Sbjct 50353 GCCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| |||||||| || || ||||| || | | || | | || || | ||| Sbjct 51210 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCGTCCTCAAGCTGC 51151 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||||||| || || ||||| ||||| || || || || || Sbjct 51150 TTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTGGATCTTG 51091 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || |||| | |||||| | || || || ||||| | || |||||||| Sbjct 51090 GCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATGGTCTTGCCGGTC 51031 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | |||||||||||| || |||||| Sbjct 51030 AGAGTTTTTACAAAAATTTGCATG 51007 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || ||||| || |||||||||| | |||| | |||| ||||| ||| Sbjct 51438 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGC 51379 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| || | |||||| || || || ||||||||||| || || || || || Sbjct 51378 TTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTT 51320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394493885548644