Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq336791 96.9 8e-15 >seq336791 Length=793321 Score = 96.9 bits (106), Expect = 8e-15 Identities = 264/392 (67%), Gaps = 18/392 (5%) Strand=Plus/Plus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 || ||||| || || |||||||| || | || ||| | ||||||||||| || | Sbjct 370355 GGCGAACCCGGAGTCGGTAAAACTGCTATAATAGAGGGACTTGCACAACGCATATTTAGT 370414 Query 150464 GGTGATGTTCCAGATTC---TATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCA 150520 ||||| || || || |||||| || | | | | |||| |||||| ||| Sbjct 370415 AAGGATGTACCTGAGTCGCTTATGAAC--TGCCGTATTATTGAGCTTGA-TATGGGAGCA 370471 Query 150521 TTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAA 150580 || | || || |||| ||||| |||||||| || || ||| | | |||| Sbjct 370472 TTAATAGCGGGGGCTAAATATCGAGGTGAATTTGAGGAGCGTCTTAAAGCAGTGCTTAGC 370531 Query 150581 GAACTAAAAGAAC---GCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTA-T 150636 ||| | |||||| ||| ||| ||||| | || ||||||||| | ||| |||||| | Sbjct 370532 GAAATCAAAGAATCAAGCGGTGAAATTATTTTATTTATCGATGAATTGCAT-CTATTAGT 370590 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 ||| | || || || |||| || ||||| ||| || |||| || || Sbjct 370591 CGGTACGGGAAAAAC---CGACGGTGCTATGGATGCCTCGAATTTGCTAAAGCCGATGCT 370647 Query 150697 ATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC-CTACGATGAATATCGTAAACAC 150754 |||| ||||| | | ||| |||||||| || || ||| ||||||||||||||| | Sbjct 370648 TGCTCGTGGTGAGCTGCACTGT-ATCGGTGCTACTACTCTA-GATGAATATCGTAAATAT 370705 Query 150755 ATTGAAAAAGATGCAGCACTACAGCGTCGTTT 150786 || || |||||||||||||| |||||||| Sbjct 370706 ATCGAGAAAGATGCAGCACTTGCTCGTCGTTT 370737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1142157573639016