Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq297272 143 5e-29 seq128081 114 2e-20 seq350993 100 5e-16 seq244445 87.8 3e-12 >seq297272 Length=244611 Score = 143 bits (158), Expect = 5e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 |||||||| ||||||||| ||||| |||| ||| || ||||||| |||| || || Sbjct 163571 TCGTCCCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTC 163512 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || | ||||| || || ||||||||||||||||| || || || |||||| Sbjct 163511 AGCCAGAAGATGGATGCGAACGATCCCGAGAAGAAGATGCCCTCGACGGCTGCAAACGCG 163452 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 || | ||| || || | ||| | || ||||||| || |||||||| ||| Sbjct 163451 ACGATGCGCTCGCCAAATGTGGCGCTGCGGTTGCTGATCCAGTTTAGTGCCCAGTCCGCC 163392 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||| |||| ||||| ||||||||||| | ||| Sbjct 163391 TTCCTCTTAATGCAGGGCATCGTCTCAACGGC 163360 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 48517 CAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAA 48576 ||| ||||| || || || || || || || ||||||||||||| || | ||| Sbjct 160725 CAGGTTCTCGTTAACGATGCCGTCGCTGGCGGCGAAGAAGGCAAGGATGTGGGAGATGAA 160666 Query 48577 ATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTC 48636 || ||||| | | | |||| | | |||| | | ||| |||||||||||||| || Sbjct 160665 GTGCCGCTCCTCGGGCTTGAGCCCGTCCCAGTGGGGGAGGTCCTTGCCCAGGTCCACCTC 160606 Query 48637 TTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCC 48688 ||||||||||||||||| || || || |||||||||| ||| |||||| Sbjct 160605 CTCCACAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATGCGCCAGATGTCC 160554 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || ||||| || || ||||||||||||||||||||||| ||||| || |||| ||| Sbjct 165067 CTGATACTCCCCAACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAGGAAATGTGCTC 165008 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC 47932 ||||||| ||| ||||| | ||| |||||| Sbjct 165007 CATGAAGTCGAAAGGGTTCTCCGAGTTGTACACC 164974 >seq128081 Length=1306280 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| |||| ||||||||||||||||||||| ||||||||| ||||||| ||| Sbjct 764252 GTGTACTCAATGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGG 764193 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||||| |||| | || ||||| |||||||| |||| || ||||||| ||| Sbjct 764192 TTGGACTTGCTGTTGCAGGCGTCTTTGTACAGCATGTAAGGGGTGCCCGTCTCTATCTGC 764133 Query 213648 GACACCAGTAT 213658 ||| |||| || Sbjct 764132 GACTCCAGGAT 764122 Score = 100 bits (110), Expect = 5e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 ||||||||||||| ||| | || | | || | | ||||||||||||| |||| Sbjct 763378 GGGACACATGAGGGACCACATCTGATCCTGTTCCACCCGCCGCATGAACAGGTCTGGGAT 763319 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 ||| || ||| ||| || |||| | || |||| ||| || | ||| || ||| Sbjct 763318 CCAGAGGGCGTAGAAGAGATCCCGTGCCCGGTTCTCCTCCTTGCCCGTGTTCTTTTTCAG 763259 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 || || |||||||| | |||||||||||| ||||||| ||| || ||||| || || || Sbjct 763258 GTCCAGGAAGTCAAACACGTCCGCGTGCCATGGCTCCAGGTACATCGCAAATGCCCCGGG 763199 Query 213959 CCTCT 213963 ||||| Sbjct 763198 CCTCT 763194 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||||||| ||||||||||||| || ||| ||||| ||| || ||||||||||||| Sbjct 770538 TAGGGGCCAAGCTCCTTGGCCAGGTCACAGCTCGCCTCCAGCGCCCCGTAGTAGATGGTC 770479 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGC-- 213291 || || |||| | |||||||| |||| | | |||||||| | || || Sbjct 770478 TCGAAGATCTGCTTGTTGAGCAGACGAGCCTTCTCGCAGTCGAAGGGCAGCCGCA-GCAA 770420 Query 213292 GTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAG 213351 | | |||| || |||| ||||| || ||||| |||||||| | || ||| ||| | Sbjct 770419 GAT-GAACGTGTCCGCCAAACCCTGCACTCCGATTCCGATGGGGCGATGGCTCTTGTTGG 770361 Query 213352 ACTT 213355 |||| Sbjct 770360 ACTT 770357 >seq350993 Length=362356 Score = 100 bits (110), Expect = 5e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 241480 GTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCG 241539 ||| || | ||||||| | | ||| || ||||| |||| || ||| || ||||| || || Sbjct 81431 GTTCTCGGTCTTGAGCGCGTGCACCTTGTCCTCGAGCCTCGAGATTCGCTCCAGCTTTCG 81372 Query 241540 CCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCG 241599 ||| || ||| |||| || | |||||||| || |||||||||||| |||||| | Sbjct 81371 TTTGCGACACTTGCTGGCGGCGATGCGGTTCCTCAGCCTCTTACGTTCCAGCTTGATCCT 81312 Query 241600 TTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||| ||||||||| || ||| Sbjct 81311 CTCCTGGTCGCGCATGTCGATGGGCGAC 81284 >seq244445 Length=1296 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||||||| ||||||||||||| || ||| ||||| ||| || ||||||||||||| Sbjct 170 TAGGGGCCAAGCTCCTTGGCCAGGTCACAGCTCGCCTCCAGCGCCCCGTAGTAGATGGTC 229 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGC-- 213291 || || |||| | |||||||| |||| | | |||||||| | || || Sbjct 230 TCGAAGATCTGCTTGTTGAGCAGACGAGCCTTCTCGCAGTCGAAGGGCAGCCGCA-GCAA 288 Query 213292 GTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAG 213351 | | |||| || |||| ||||| || ||||| |||||||| | || ||| ||| | Sbjct 289 GAT-GAACGTGTCCGCCAAACCCTGCACTCCGATTCCGATGGGGCGATGGCTCTTGTTGG 347 Query 213352 ACTT 213355 |||| Sbjct 348 ACTT 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927230376033280