Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq297272 152 1e-31 seq16628 96.9 6e-15 seq128081 86.0 1e-11 >seq297272 Length=244611 Score = 152 bits (168), Expect = 1e-31 Identities = 157/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT 25866 || ||| |||| |||||||||||| ||||| | || ||||||| || || ||||| Sbjct 163372 ATGCCCTGCATTAAGAGGAAGGCGGACTGGGCACTAAACTGGATCAGCAACCGCAGCGCC 163431 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 || ||||||||||| | || || ||||| || || ||||||||||| ||| || ||| Sbjct 163432 ACATTTGGCGAGCGCATCGTCGCGTTTGCAGCCGTCGAGGGCATCTTCTTCTCGGGATCG 163491 Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAA 25985 || || ||||||||||||| ||| || |||||| ||||||||| || ||| ||| Sbjct 163492 TTCGCATCCATCTTCTGGCTGAAGAAG-CGGGGACTCATGCCCGGCCTCACCTTCAGCAA 163550 Query 25986 CGAGCTCATCAGCAGGGACGAGG 26008 |||||||||||| ||||||||| Sbjct 163551 CGAGCTCATCAGTCGGGACGAGG 163573 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| |||| || |||||||||||||| ||||||||||| ||| Sbjct 164990 AACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTCTTTGAGAAG 165049 Query 26305 AGGGTCGGCGACTATCA 26321 ||||| || || ||||| Sbjct 165050 AGGGTTGGGGAGTATCA 165066 >seq16628 Length=231947 Score = 96.9 bits (106), Expect = 6e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 222026 TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTC 222085 |||| ||||| | |||||| | || || ||||||| | | ||| ||||| | | | Sbjct 199839 TCTTCCACCCTTTTCATGAATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCC 199898 Query 222086 CGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGC 222145 | ||| || ||| | ||||| | ||||||||||| || || | || |||||| Sbjct 199899 CTACTCTCTTCTTTACCGGTATTTTTTTTTAGATCCAAAAAATCGAACACATCTGCGTGC 199958 Query 222146 CACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 ||||| |||||||||| ||| | || || |||| ||||||||||||||||| || Sbjct 199959 CACGGTTCCAGATAGATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGAC 200014 >seq128081 Length=1306280 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 221746 GGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTG 221805 ||| |||| |||| ||| || || |||||||||||||||||||| || |||| || || Sbjct 764253 GGTGTACTCAATGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTG 764194 Query 221806 ATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTG 221865 || ||||||| ||| ||||| ||||| ||||| | || ||| ||||| | ||| Sbjct 764193 GTTGGACTTGCTGTTGCAGGCGTCTTTGTACAGCATGTAAGGGGTGCCCGTCTCTATCTG 764134 Query 221866 AGCCACCAGAAT 221877 | | |||| || Sbjct 764133 CGACTCCAGGAT 764122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924554790964480