Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq262139 105 6e-18 >seq262139 Length=4471 Score = 105 bits (116), Expect = 6e-18 Identities = 120/158 (76%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 39253 GATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCAT 39312 |||||| | ||| ||| | || || |||| ||||| || ||||| |||||||||||||| Sbjct 3294 GATGATCAGAATCTCCCTGATATCCGCCAGCATCAGCACGGATAAGGGGTAGTAGATCAT 3353 Query 39313 GGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACAC---TGCGTGTTACCGGATGAAG 39369 ||| ||||| || ||||||||||| |||||| ||||| || ||| || || || || Sbjct 3354 GGGCTTGTCGTAGACAGGGAGCAAGTGCTTGGACACACCCATG-GTGATA--GGGTGCAG 3410 Query 39370 GCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCA 39407 ||| || || || || ||||| | ||| ||||||| Sbjct 3411 GCGCGTGCCCGAGCCGCCTGCCAATACAATTCCTTTCA 3448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470447485603040