Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq165536 118 7e-21 seq118272 107 1e-17 seq16628 107 1e-17 >seq165536 Length=484117 Score = 118 bits (130), Expect = 7e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 474651 AATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGC 474709 ||| |||||| |||||| | || | ||||| ||||||||| |||| || ||| Sbjct 103572 AATATTCACCAAGCCAAATTAGTGCATTCATTTTACAAAAAATGAAAGAAACTGCCGAGA 103513 Query 474710 TCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGAT 474769 ||| | || || ||||||| | ||||||||||| || || || |||||| ||||| Sbjct 103512 GT-TATTTAGGGGAAAAAGTAACACAAGCAGTAATTACCGTACCTGCTTATTTTGATGAT 103454 Query 474770 TCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATT 474829 | || ||||||||||| |||||||| || | ||| ||||||||| | || | | || Sbjct 103453 GCACAGCGTCAAGCAACGAAAGATGCCGGTAAAATAGCAGGTCTTGAGGTCCTTAGAATA 103394 Query 474830 ATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 || || || || || || || || |||||||| ||| | || || Sbjct 103393 ATCAACGAGCCGACTGCTGCAGCTCTTGCTTACGGTTTCGAGAA 103350 Score = 100 bits (110), Expect = 2e-15 Identities = 222/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 475886 GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATT 475945 ||||| || || || || | || ||||||| |||| || | | || | | || Sbjct 102736 GACGTTACGCCTCTATCCCTTGGCATTGAAACTCTTGGTGGCGTATTTACAAGATTAATA 102677 Query 475946 GACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAAT 476005 || | |||||| |||| || || ||| | ||||| || ||| | |||||| Sbjct 102676 GATCGTAATACTACTATACCTACTAAGAAAAGTCAGGTATTCTCAACTGCTGACGATAAT 102617 Query 476006 CAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAAC 476065 || | ||||| || | | || |||||||| | || | | ||||||||||| Sbjct 102616 CAGCATGCCGTAACTATTAGAGTATTCCAAGGTGAACGTGAAATGGCAAAAGATAATAAA 102557 Query 476066 AAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATT 476125 |||||| |||||||| |||||||| |||||||| || ||||| | || ||||| Sbjct 102556 TTACTTGGTCAGTTTAATCTCGAAGGTATACCTCCTGCACCAAGAGGTTTGCCGCAAATA 102497 Query 476126 GAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCT 476185 ||||| || ||||| |||||||| || || || | ||||| | ||| |||||| | Sbjct 102496 GAAGTAACGTTTGACATTGATGCTAACGGAATAGTGCATGTTTCAGCTAAAGATAAAGCA 102437 Query 476186 A---GTAACAAGAGTAAAAATATAACTATT 476212 | ||| ||||| | ||| |||||||| Sbjct 102436 AGCGGTA--AAGAGCAGAAA-GTAACTATT 102410 Score = 87.8 bits (96), Expect = 1e-11 Identities = 118/164 (72%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 || || || || || || || ||||| | || ||||||||||| ||||| | | |||| Sbjct 103374 GCAGCAGTCGGCTCGTTGATTATTCTAAGGACCTCAAGACCTGCTATTTTACCGGCATCT 103433 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962 ||||| || || || ||||||| |||||||||||| || ||||| || |||| | Sbjct 103434 TTCGTTGCTTGACGCTGTGCATCATCAAAATAAGCAGGTACGGTAATTACTGCTTGT--- 103490 Query 290963 actttctttttc----aaataattttctgccatttgttttattt 291002 || ||||||| |||||| | || || ||| ||| |||| Sbjct 103491 -GTTACTTTTTCCCCTAAATAACTCTCGGCAGTTTCTTTCATTT 103533 >seq118272 Length=246527 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || ||||||||||| || ||||| | || || || | || || Sbjct 51001 ACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGT 50942 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || ||||| || || || || || ||||| || || ||||| ||||| || Sbjct 50941 GCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCC 50882 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| |||||| ||||| ||| || |||||| || | | ||| || Sbjct 50881 CTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAG 50822 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| |||||||| || || ||||| Sbjct 50821 GGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTG 50783 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 50707 ATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTT 50648 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| ||||| || || || || || || ||| || | || || || || Sbjct 50647 GTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGAT 50588 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| |||||||||||||| || || Sbjct 50587 AGTCTTGCCGGTCAGAGTCTTAACGAAGATCTG 50555 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||| ||||| || ||||| || ||||| ||||| || |||||||| ||||||||| Sbjct 51162 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTG 51103 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| ||| || ||| || || ||| || | || || ||||| Sbjct 51102 TCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATG 51043 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| || || |||||||| Sbjct 51042 GTCTTGCCGGTCAGAGTTTTTACAAAAATTTG 51011 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || || ||||| || ||||| | ||| ||||| | || ||| Sbjct 50316 CGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTT 50257 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| || ||||| || ||||| || ||||| || ||||| |||||||| ||| Sbjct 50256 CGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCT 50197 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| ||||| || || || || || || || || | || || Sbjct 50196 TCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGT 50137 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||||||||| || || ||||| || || Sbjct 50136 GTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTG 50099 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| || || || || | ||| || ||||| || || || |||||||| Sbjct 50479 ATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTT 50420 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || || || ||||||| |||||| || ||| || | ||| || || || Sbjct 50419 GTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGAT 50360 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| |||||||| || || ||||| || || Sbjct 50359 GGTTTTGCCGGTGAGGGTTTTGACGAAGATCTG 50327 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| ||||| || ||||| || || || ||| ||| || || ||||| | || Sbjct 51457 ACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATG--TTGTAATCGGACAGG 51400 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 |||| | |||||| | |||||||||||||| || ||||| || || || || ||||| Sbjct 51399 GTTCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATG 51340 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||||||||| || ||||| ||||| || || || || || | || Sbjct 51339 CCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCC 51280 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || || || ||||| ||||| ||||| Sbjct 51279 AGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTG 51239 >seq16628 Length=231947 Score = 107 bits (118), Expect = 1e-17 Identities = 355/553 (64%), Gaps = 18/553 (3%) Strand=Plus/Plus Query 592027 ATTCCATAAATCAAACTGGAATTTACCTTTTGAAAGTGGACTTCCCCAAAAGGTTTCATA 592086 |||||| | ||| |||| | | |||| ||| | |||||| || | || || || Sbjct 199157 ATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTACGTCTCGTA 199216 Query 592087 TGGACCAGATTCTTTGGCCATTTGTAATGATTCTGTCATTGTTCCAAAATATATAGTTTC 592146 |||||| | | ||| | || || | ||| || | |||| ||||||| ||||| Sbjct 199217 CGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATATTGTTTC 199276 Query 592147 AAATATTTTCCTATTAAGATCTCGAGCAATATCAGAATCAAATGGAATTTTAAATATAGC 592206 ||| |||||| |||||| || | ||| ||| | || || |||| | | |||| | Sbjct 199277 AAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTAATAAAAT 199336 Query 592207 AAACACATCGGCTAATCCTTGTACACCAACGCCAATAGGTCTATGGCGTAAATTTGAAAC 592266 || | ||||| || ||||| || || | |||||||| | ||| || | ||||||| Sbjct 199337 GAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGTTTGAAA- 199395 Query 592267 ACGTGTTTTTTCT---ACTGGATAATAATTTACATCAATAATATTATTTAAATTTCTTGT 592323 || | ||| | |||||||||||| ||||| || || ||||| || ||||| || Sbjct 199396 --GTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTCTAGT 199453 Query 592324 AATAATTCTTGCGACCTTGTACAATTTATTATAATCAAACTCTGGAACACCGTTTTCATG 592383 | | ||| | || | |||||| | | |||| || || | |||| Sbjct 199454 TACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAA------------GTGTCCATG 199501 Query 592384 AATAATAAATTTAGGTAAACAAATTGATGACAAATTACAAACTGCATATTCATCTGCAGA 592443 | || ||| | ||| ||| || | |||||||| || ||| || || | || Sbjct 199502 ATAAACGAATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGA 199561 Query 592444 TGAGAATTCTACAATTTCACAACAAAGATTTGAGCCATTAATTACGCCTATATTAATCTG 592503 | | | ||||| ||||| ||| ||||| | || ||| || | || | || Sbjct 199562 CGTGTACTCTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTG 199621 Query 592504 ATTTGATTTTTGATTGATAGCATCTTTAAACAATATGTATGGTACACCTGTTTCAATTTG 592563 ||| |||||| |||| || ||||| | || || ||||| ||| ||||| |||| Sbjct 199622 ATTCGATTTTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTG 199681 Query 592564 TGTTTCCATTATT 592576 || ||| || ||| Sbjct 199682 TGATTCGATAATT 199694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3252329895344816