Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq165536 118 7e-21
seq118272 107 1e-17
seq16628 107 1e-17
>seq165536
Length=484117
Score = 118 bits (130), Expect = 7e-21
Identities = 162/224 (72%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 474651 AATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGC 474709
||| |||||| |||||| | || | ||||| ||||||||| |||| || |||
Sbjct 103572 AATATTCACCAAGCCAAATTAGTGCATTCATTTTACAAAAAATGAAAGAAACTGCCGAGA 103513
Query 474710 TCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGAT 474769
||| | || || ||||||| | ||||||||||| || || || |||||| |||||
Sbjct 103512 GT-TATTTAGGGGAAAAAGTAACACAAGCAGTAATTACCGTACCTGCTTATTTTGATGAT 103454
Query 474770 TCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATT 474829
| || ||||||||||| |||||||| || | ||| ||||||||| | || | | ||
Sbjct 103453 GCACAGCGTCAAGCAACGAAAGATGCCGGTAAAATAGCAGGTCTTGAGGTCCTTAGAATA 103394
Query 474830 ATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873
|| || || || || || || || |||||||| ||| | || ||
Sbjct 103393 ATCAACGAGCCGACTGCTGCAGCTCTTGCTTACGGTTTCGAGAA 103350
Score = 100 bits (110), Expect = 2e-15
Identities = 222/330 (67%), Gaps = 6/330 (2%)
Strand=Plus/Minus
Query 475886 GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATT 475945
||||| || || || || | || ||||||| |||| || | | || | | ||
Sbjct 102736 GACGTTACGCCTCTATCCCTTGGCATTGAAACTCTTGGTGGCGTATTTACAAGATTAATA 102677
Query 475946 GACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAAT 476005
|| | |||||| |||| || || ||| | ||||| || ||| | ||||||
Sbjct 102676 GATCGTAATACTACTATACCTACTAAGAAAAGTCAGGTATTCTCAACTGCTGACGATAAT 102617
Query 476006 CAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAAC 476065
|| | ||||| || | | || |||||||| | || | | |||||||||||
Sbjct 102616 CAGCATGCCGTAACTATTAGAGTATTCCAAGGTGAACGTGAAATGGCAAAAGATAATAAA 102557
Query 476066 AAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATT 476125
|||||| |||||||| |||||||| |||||||| || ||||| | || |||||
Sbjct 102556 TTACTTGGTCAGTTTAATCTCGAAGGTATACCTCCTGCACCAAGAGGTTTGCCGCAAATA 102497
Query 476126 GAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCT 476185
||||| || ||||| |||||||| || || || | ||||| | ||| |||||| |
Sbjct 102496 GAAGTAACGTTTGACATTGATGCTAACGGAATAGTGCATGTTTCAGCTAAAGATAAAGCA 102437
Query 476186 A---GTAACAAGAGTAAAAATATAACTATT 476212
| ||| ||||| | ||| ||||||||
Sbjct 102436 AGCGGTA--AAGAGCAGAAA-GTAACTATT 102410
Score = 87.8 bits (96), Expect = 1e-11
Identities = 118/164 (72%), Gaps = 8/164 (5%)
Strand=Plus/Plus
Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902
|| || || || || || || ||||| | || ||||||||||| ||||| | | ||||
Sbjct 103374 GCAGCAGTCGGCTCGTTGATTATTCTAAGGACCTCAAGACCTGCTATTTTACCGGCATCT 103433
Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962
||||| || || || ||||||| |||||||||||| || ||||| || |||| |
Sbjct 103434 TTCGTTGCTTGACGCTGTGCATCATCAAAATAAGCAGGTACGGTAATTACTGCTTGT--- 103490
Query 290963 actttctttttc----aaataattttctgccatttgttttattt 291002
|| ||||||| |||||| | || || ||| ||| ||||
Sbjct 103491 -GTTACTTTTTCCCCTAAATAACTCTCGGCAGTTTCTTTCATTT 103533
>seq118272
Length=246527
Score = 107 bits (118), Expect = 1e-17
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| || || ||||||||||| || ||||| | || || || | || ||
Sbjct 51001 ACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGT 50942
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | || || ||||| || || || || || ||||| || || ||||| ||||| ||
Sbjct 50941 GCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCC 50882
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||| |||||| ||||| ||| || |||||| || | | ||| ||
Sbjct 50881 CTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAG 50822
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || || ||||| |||||||| || || |||||
Sbjct 50821 GGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTG 50783
Score = 96.9 bits (106), Expect = 2e-14
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| |||||||| || ||||| || ||||| |||||||| ||||||||
Sbjct 50707 ATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTT 50648
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| ||||| || || || || || || ||| || | || || || ||
Sbjct 50647 GTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGAT 50588
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || ||||| |||||||||||||| || ||
Sbjct 50587 AGTCTTGCCGGTCAGAGTCTTAACGAAGATCTG 50555
Score = 95.1 bits (104), Expect = 8e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| ||||| ||||| || ||||| || ||||| ||||| || |||||||| |||||||||
Sbjct 51162 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTG 51103
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| ||| || ||| || || ||| || | || || |||||
Sbjct 51102 TCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATG 51043
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| ||||| || || ||||||||
Sbjct 51042 GTCTTGCCGGTCAGAGTTTTTACAAAAATTTG 51011
Score = 91.5 bits (100), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| || || || ||||| || ||||| | ||| ||||| | || |||
Sbjct 50316 CGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTT 50257
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | |||||| || ||||| || ||||| || ||||| || ||||| |||||||| |||
Sbjct 50256 CGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCT 50197
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| ||||| || || || || || || || || | || ||
Sbjct 50196 TCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGT 50137
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||||||||| || || ||||| || ||
Sbjct 50136 GTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTG 50099
Score = 91.5 bits (100), Expect = 1e-12
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| || || || || | ||| || ||||| || || || ||||||||
Sbjct 50479 ATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTT 50420
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || || || ||||||| |||||| || ||| || | ||| || || ||
Sbjct 50419 GTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGAT 50360
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| |||||||| || || ||||| || ||
Sbjct 50359 GGTTTTGCCGGTGAGGGTTTTGACGAAGATCTG 50327
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| ||||| || ||||| || || || ||| ||| || || ||||| | ||
Sbjct 51457 ACGGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATG--TTGTAATCGGACAGG 51400
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|||| | |||||| | |||||||||||||| || ||||| || || || || |||||
Sbjct 51399 GTTCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATG 51340
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
||||||||||| || ||||| ||||| || || || || || | ||
Sbjct 51339 CCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCC 51280
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || || || ||||| ||||| |||||
Sbjct 51279 AGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATTTG 51239
>seq16628
Length=231947
Score = 107 bits (118), Expect = 1e-17
Identities = 355/553 (64%), Gaps = 18/553 (3%)
Strand=Plus/Plus
Query 592027 ATTCCATAAATCAAACTGGAATTTACCTTTTGAAAGTGGACTTCCCCAAAAGGTTTCATA 592086
|||||| | ||| |||| | | |||| ||| | |||||| || | || || ||
Sbjct 199157 ATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGACTACCAGGGTACGTCTCGTA 199216
Query 592087 TGGACCAGATTCTTTGGCCATTTGTAATGATTCTGTCATTGTTCCAAAATATATAGTTTC 592146
|||||| | | ||| | || || | ||| || | |||| ||||||| |||||
Sbjct 199217 CGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAGCTCCATAATATATTGTTTC 199276
Query 592147 AAATATTTTCCTATTAAGATCTCGAGCAATATCAGAATCAAATGGAATTTTAAATATAGC 592206
||| |||||| |||||| || | ||| ||| | || || |||| | | |||| |
Sbjct 199277 AAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGAAAGGAAGTCTTAATAAAAT 199336
Query 592207 AAACACATCGGCTAATCCTTGTACACCAACGCCAATAGGTCTATGGCGTAAATTTGAAAC 592266
|| | ||||| || ||||| || || | |||||||| | ||| || | |||||||
Sbjct 199337 GAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGTTTGAAA- 199395
Query 592267 ACGTGTTTTTTCT---ACTGGATAATAATTTACATCAATAATATTATTTAAATTTCTTGT 592323
|| | ||| | |||||||||||| ||||| || || ||||| || ||||| ||
Sbjct 199396 --GTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTCTAGT 199453
Query 592324 AATAATTCTTGCGACCTTGTACAATTTATTATAATCAAACTCTGGAACACCGTTTTCATG 592383
| | ||| | || | |||||| | | |||| || || | ||||
Sbjct 199454 TACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAA------------GTGTCCATG 199501
Query 592384 AATAATAAATTTAGGTAAACAAATTGATGACAAATTACAAACTGCATATTCATCTGCAGA 592443
| || ||| | ||| ||| || | |||||||| || ||| || || | ||
Sbjct 199502 ATAAACGAATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAACCTCGTCAACGGA 199561
Query 592444 TGAGAATTCTACAATTTCACAACAAAGATTTGAGCCATTAATTACGCCTATATTAATCTG 592503
| | | ||||| ||||| ||| ||||| | || ||| || | || | ||
Sbjct 199562 CGTGTACTCTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTTTTTG 199621
Query 592504 ATTTGATTTTTGATTGATAGCATCTTTAAACAATATGTATGGTACACCTGTTTCAATTTG 592563
||| |||||| |||| || ||||| | || || ||||| ||| ||||| ||||
Sbjct 199622 ATTCGATTTTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCGTTTG 199681
Query 592564 TGTTTCCATTATT 592576
|| ||| || |||
Sbjct 199682 TGATTCGATAATT 199694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3252329895344816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |