Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq16628 163 1e-35 >seq16628 Length=231947 Score = 163 bits (180), Expect = 1e-35 Identities = 269/385 (70%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| |||||||| |||||||||| | ||||| | ||| | || || | |||||||| Sbjct 199853 CATGAATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTT 199912 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| ||| ||||||||||| || ||||| || | ||||| |||||| ||||| | ||| Sbjct 199913 ACCGGTATTTTTTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATA 199972 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||| || | || |||||| ||||| ||||| ||||| | ||| || | || Sbjct 199973 GATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTT 200032 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTT-GAAAATCCGTTTG----TGCTATGAATC 26167 | ||| | ||| || || ||| | ||| || || |||| ||||||| | | Sbjct 200033 ATACACTCGTAGCATGGGTAC-AATACCGTTCGATGTACCATTTGTTCCTGCTATGTAAC 200091 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | ||| | | | ||| | ||| | ||| || |||||||||||| |||||||| Sbjct 200092 T----TCCAGAAGCACGAATGTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAA 200147 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 || |||||| | | | ||||||| | ||||||| ||||||||| |||||||| Sbjct 200148 ATGAGTGCACACTGTTTCAGTGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGC 200207 Query 26288 AATAAAAAACAAGAAGATAATTGCG 26312 |||||||||||| || | ||||| Sbjct 200208 AATAAAAAACAACTCGACAGTTGCG 200232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 251900514383900