Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq336791 132 1e-25 seq16628 95.1 4e-14 seq128081 87.8 5e-12 >seq336791 Length=793321 Score = 132 bits (146), Expect = 1e-25 Identities = 344/515 (67%), Gaps = 22/515 (4%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||||||||| | ||| |||||| | || | | ||| | | |||||| ||||| Sbjct 535534 ATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTTTGTAGCTGC 535593 Query 288912 CAATACAACAATAGATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAA 288970 | | |||| ||| ||||||| |||||| ||||| ||| ||||| || | Sbjct 535594 AATGATCACAACTCCCTCG-TTTGCTTCAAATCCGTCCATTTCGACTAACATTTGGTTTA 535652 Query 288971 GTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt-- 289028 ||||| || | ||||||||| || | | ||| | || | | | | | Sbjct 535653 AGGTTTGCTCACGTTCATCATTG---CCGC------CGCCCATACCGATACCTCTATGGC 535703 Query 289029 -ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||| || ||||||||||| || || ||||| | ||| |||| ||| || | | | Sbjct 535704 GACCCACCGCATCAATTTCATCGATAAAAATAATACAAGGAGCATTACGTTTACCCTGTT 535763 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| | | | |||||| ||| || | ||| ||| ||||||| ||||| ||||| Sbjct 535764 CAAACATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAACAAAATCAGAGC 535823 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||||| | || || | ||||| || || ||||| | ||| | || |||||||||| Sbjct 535824 CGGATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGCAAGAAGTGTCT 535883 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGAC 289266 |||| |||||||| || ||| ||| | | ||||| |||| ||| | ||| || Sbjct 535884 TACCGGTTCCAGGAGG-ACCTATAAGTAAGCAGCCTTTCGGTATTTTACCGCCA--AGTT 535940 Query 289267 TT---ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || | || || | ||| ||||||| ||||| ||||| | ||| | |||||| Sbjct 535941 TTTGGAACTTGCTTGGATCTC-TTAAAAAATCTACTATTTCAGTTAATTCTTCTTTTGCT 535999 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 ||||| ||||||||||| ||| ||||| || Sbjct 536000 TCATCGATACCTGCTACATCTTTAAAGGTAATTTT 536034 >seq16628 Length=231947 Score = 95.1 bits (104), Expect = 4e-14 Identities = 262/395 (66%), Gaps = 20/395 (5%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 |||||||||||||| || || || || || || || | || | |||||| || | |||| Sbjct 199998 TTGCCACCCTGATCGACGTAACGTGCCGTGTTGTTATACACTCGTAGCATGGGTACAATA 200057 Query 156120 CCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGA--ACCAGATGAGCGAACATTATGA 156176 || || || || ||||| ||||| || |||| | ||||| | |||| || || Sbjct 200058 CCGTTCGATGTACCATTTGTTCCTGC---TATGTAACTTCCAGAAGCACGAATGTTGTGT 200114 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 || | | ||| || ||||| | | |||| ||||| | || || | || | |||| | Sbjct 200115 ATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAGTGCACACTGTTTCAGTGTATCG 200174 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATT---GATAGTAGATAGCACGAACTTAATTGA 156293 | || ||||| || ||| |||| |||| ||| | | | | ||| | ||| Sbjct 200175 TATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAAAAAACAACTCGA---CAGTTGC 200231 Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGAC 156353 ||| || || ||||||||||| ||||| || | ||| || |||| | || | |||| Sbjct 200232 GGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCTTGCGTAAACCATTTTTCAGAC 200291 Query 156354 ATATAATCGTATGTCTCCTTAAT----CTTCTCAAGATTAGACCCGTGAATACAGATAGA 156409 || | ||| || || ||| || || ||||| ||||||||| | || || Sbjct 200292 ATGAGGTTGTACGTTTC---AATCGCACTGCT-AAGATCGTCCCCGTGAATGCCAATCGA 200347 Query 156410 GACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 || | ||| ||| || || || |||||||||| Sbjct 200348 AACGCGCATAAGCATGTGTTGTGGCCGCTCTACAA 200382 >seq128081 Length=1306280 Score = 87.8 bits (96), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 ||||||||| | |||||||||||| | ||||||||||| || || ||||| || || Sbjct 764232 GCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGC 764173 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 || ||||| || ||||| ||||| || ||||| ||||| | ||||| || Sbjct 764172 GTCTTTGTACAGCATGTAAGGGGTGCCCGTCTCTATCTGCGACTCCAGGAT 764122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1464849844382804