Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq16628 242 3e-59 seq118272 145 7e-30 seq368444 102 7e-17 seq128081 82.4 7e-11 >seq16628 Length=231947 Score = 242 bits (268), Expect = 3e-59 Identities = 919/1432 (64%), Gaps = 34/1432 (2%) Strand=Plus/Plus Query 138502 TTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGC 138561 |||| | ||||||||| || | | ||| || ||| || | ||| | ||| | || Sbjct 198960 TTTACTATCTGAAATTCTCCAGAAAGTACGCGCCGAGTATACACATTGCTAGTGTATGGT 199019 Query 138562 TCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACC 138621 || | | ||||| || || |||||||| || || | || || ||||| || || Sbjct 199020 TCCATTGCCTCGTTATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGCTACG 199079 Query 138622 AAAAGAGAATTCCGTAAACCGTGAAGCTTG--ATTCGTTCCTTGAGCGACGACCAGTCCC 138679 | |||| ||| || | || |||||| |||| ||| || | | ||||| |||| Sbjct 199080 AGAAGACTATTGCGGATTCCA--AAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATCCC 199137 Query 138680 ACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGAC 138739 ||| | |||| || ||||||||||||||||| | ||||| | | |||| Sbjct 199138 ACAGGTTTGAAGGTGTTACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGGAC 199197 Query 138740 TGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCG 138799 | || ||||| ||||| |||||||| || | || || ||| | || | | Sbjct 199198 TACCAGGGTACGTCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAAAG 199257 Query 138800 CACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGT 138859 | ||||| || || ||||| || | || ||| | | || ||| | | ||| Sbjct 199258 CTCCATAATATATTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTCGA 199317 Query 138860 ACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGC 138919 | || | | | | |||| |||||||||| ||||| || || | ||| | ||||| Sbjct 199318 AAGGAAGTCTTAATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGC 199377 Query 138920 GATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGA 138976 |||| |||| ||||| ||| || |||| || |||||||| || |||||||| | Sbjct 199378 GATGCCGCATGTTTGAAAGTTTCGC---TTCGGGAATTGGATAATAATTAACATCGATTA 199434 Query 138977 TTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATG 139036 |||| || || |||| || || |||| || ||| |||||||||| | Sbjct 199435 TTTTATTCAAGTTTCTAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCGAA-- 199492 Query 139037 TGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGC 139096 || ||| | || | || ||| || | | |||||| |||| || | Sbjct 199493 ----------GT-GTCCATGA--TAAACGAATCGATTCAAAGCAATCGACGCTAAATTAC 199539 Query 139097 ACACCGCCACTTCGTCGG-GGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 |||| || || ||||| || || |||| || || ||||||| ||| | ||||||||| Sbjct 199540 ACACGGCAACCTCGTCAACGGACG-TGTACTCTACGATTTCGGTACATAGATTACTACAT 199598 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 || || ||||| | |||| |||||| ||||| || || || |||||||| | |||| Sbjct 199599 TTTATTGTACCGACGTTTTTTTGATTCGATTTTCTATTGCAGGCGTCTTTGTATAACATA 199658 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAACAAGTCCCTA-GCTT 139273 || || || ||||||||| ||||| || ||||| | | | | ||| | || Sbjct 199659 TATGGCGTACCAGTTTCCGTTTGTGATTCGATAATTGCACTCCAG--AGTTGTTGTGCAC 199716 Query 139274 GTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTT 139333 | | ||||||| ||| ||| || |||||| |||| |||| ||||| || Sbjct 199717 GAACTTGACGCCGATAACGTTTCTCCGTCTCGTATCGAACGTAAAGTTTTTCGAAGTCTT 199776 Query 139334 CACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGT 139393 | ||||| | || || | ||| | || |||||||| | |||||||| || | Sbjct 199777 CGCCGTATACATCTTGCAGGTGAGGACTTTCGTGTGGACACATCAACGACCATATTCCAT 199836 Query 139394 TCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCG 139453 | | || | ||||||| | ||| |||||||||||| || | | | ||| || | Sbjct 199837 CTTCTTCCACCCTTTTCATGAATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTG 199896 Query 139454 CCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGT 139513 || | | ||||| ||| | || ||| | | | ||||| || || || |||| Sbjct 199897 CCCTACTCTCTTCTTTACCGGTATTTTTTTTTAGATCCAAAAAATCGAACACATCTGCGT 199956 Query 139514 GCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGT 139570 |||| ||||||||||||||||| || || || | | |||||||| |||||||||| Sbjct 199957 GCCACGGTTCCAGATAGATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGT 200016 Query 139571 GTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGG 139630 ||| | | || || | || || | ||| || | | |||| ||| ||| || || | Sbjct 200017 AACGTGCCGTGTTGTTATACACTCGTAGCATGGGTACAATACCGTTCGATGTACCATTTG 200076 Query 139631 TGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGC 139690 | | ||| ||| ||| || | || |||| || || || ||||| || Sbjct 200077 TTCCTGCTATGTAACTTCCAGAAGCACGAATGTTGTGTATGTTAATTCCTATTCCACCAG 200136 Query 139691 CAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGT 139750 | |||| || || | | || | | ||| |||||||| ||| |||||| |||| Sbjct 200137 CCGATTTTGAAATGAGTGCACACTGTTTCAGTGTATCGTATATTCCTTCTATGCTATCGT 200196 Query 139751 CCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACA 139810 | | ||| | | ||| || ||| ||||||||| || || || || | Sbjct 200197 CTTTCATTTGCAATAAAAAACAACTCGACAGTTGCGGTTTAGGAGTCCCAGCGTTGAAAA 200256 Query 139811 GAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGC 139870 | || ||| || ||||| ||| || || ||||| | | ||||||||| || || | Sbjct 200257 GTGTGGGAGATGCTTGCGTAAACCATTTTTCAGACATGAGGTTGTACGTTTCAATCGCAC 200316 Query 139871 TCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | || ||| ||||| || || | || || ||||| ||||| ||||| Sbjct 200317 TGCTAAGATCGTCCCCGTGAATGCCAATCGAAACGCGCATAAGCATGTGTTG 200368 >seq118272 Length=246527 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||| ||||| || |||||||| || || | | | Sbjct 49640 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 49699 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| |||||||| || || || || ||||| || Sbjct 49700 GACACGATTGAAAACGTGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCCCGACCAG 49759 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| ||||||| ||||| || ||||| || || | | | |||| || || ||| Sbjct 49760 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCACCTTGTCCGACTACAAC 49819 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| |||| |||| ||||||||||| Sbjct 49820 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGGC 49867 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || |||||||| || || || || || || || ||| | Sbjct 50096 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAGC 50155 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| || | ||| || || ||||| ||||| || ||||||||||| Sbjct 50156 GACACAATCGAGAACGTGAAGGCCAAA-ATTCAGGACAAGGAAGGCATTCCTCCCGATCA 50214 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||||||||| || ||||| || ||| ||| | |||| ||||| || Sbjct 50215 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAA 50274 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || ||| |||| |||| ||||||| ||| Sbjct 50275 TATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGGC 50323 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 50324 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAGT 50383 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| || ||||| ||||| ||||| || || || ||||| Sbjct 50384 GACACAATTGAAAATGTCAAAGCCAAAATCCAGGACAAGGAAGGGATCCCCCCGGATCAG 50443 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || || || || ||| | | | |||| || || ||| Sbjct 50444 CAGCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAAC 50503 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || ||||||||||| | || | ||||| ||| Sbjct 50504 ATCCAGAAGGAGTCCACCCTACACTTGGTTCTCCGGCTCCGCGGTGGC 50551 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| || || ||||| ||||| || || ||| Sbjct 51008 ATGCAAATTTTTGTAAAAACTCTGACCGGCAAGACCATTACTCTCGAGGTCGAGCCCAGT 51067 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||| ||||| ||||| || ||||| || ||| Sbjct 51068 GACACCATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAA 51127 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| ||||| | | | |||| || || ||| Sbjct 51128 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTGTCGGACTACAAC 51187 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || ||| |||| |||| | ||||| || Sbjct 51188 ATCCAGAAAGAATCCACCCTCCACCTGGTTCTGCGGCTCCGCGGTGG 51234 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || ||||| || ||||| || || || || || ||| Sbjct 50552 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATCACACTGGAGGTGGAGCCCAGT 50611 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| || || ||||| ||||| || ||||||||||| Sbjct 50612 GACACGATCGAGAACGTGAAGGCGAAA-ATTCAGGACAAGGAAGGTATTCCTCCCGATCA 50670 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||||||||| || || ||||| || ||| | | | |||| || || || Sbjct 50671 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACCCTGTCGGACTACAA 50730 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || || || || || || || ||||| ||||| |||| || ||| Sbjct 50731 CATCCAGAAAGAGTCTACCCTCCATCTGGTGCTGCGACTGCGTGGTGGC 50779 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || || || || |||||||| || ||| Sbjct 50780 ATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGT 50839 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||||||||| || || || || || || || Sbjct 50840 GATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 50899 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| ||||| || ||||| | | ||||||| || ||| Sbjct 50900 CAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAAC 50959 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || | ||| ||||| | || || ||| Sbjct 50960 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGACTTCGTGGTGGC 51007 >seq368444 Length=413118 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || || || || || ||| |||||||||| || || |||||||||||| | | Sbjct 77824 AGGCATCCCCCCTGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGGCG 77765 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | |||| || || ||||| || ||||| ||||| |||||| ||||| |||| ||||| Sbjct 77764 CACCCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTACACCTGGTGCTGCGCTTGCG 77705 Query 24925 CGGAGGCGGAA 24935 || |||| || Sbjct 77704 TGGCGGCGCAA 77694 >seq128081 Length=1306280 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTG-ACGCGCCTCATGAACAGATCCGGAAT 139427 ||||||||||| ||||| | | | || || || |||| ||||||||| || || || Sbjct 763377 GGACACATGAGGGACCACAT-CTGATCCTGTTCCACCCGCCGCATGAACAGGTCTGGGAT 763319 Query 139428 CCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCAT 139487 ||| | ||| | | | ||| || ||| || || ||| ||| |||| ||||| Sbjct 763318 CCAGAGGGCGTAGAAGAGATCCCGTGCCCGGTTCTCCTCCTTGCCCGTGTTCTTTTTCAG 763259 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544 || ||||| ||||| ||||| ||||||||||| ||||| || || || | ||| || Sbjct 763258 GTCCAGGAAGTCAAACACGTCCGCGTGCCATGGCTCCAGGTACATCGCAAATGCCCC 763202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447819680449760