Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17663 161 8e-35 >seq17663 Length=183429 Score = 161 bits (178), Expect = 8e-35 Identities = 190/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 |||| | ||||| |||||||| || | || | ||| | ||||||||| || || Sbjct 79881 GAGCACCGTCTCGGGGTTGTCGCACGAGGCGCAAAGCACGTAGCGGCGGATGAAGCCGTC 79822 Query 34374 AAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTT 34433 || | |||||| | ||| | | ||||||| |||||||||||| | || ||||| || Sbjct 79821 CAGGATGTCCTGCAGCTTGGCCGCCTCGTGGGCCCCGTTGACGATGTAGCGGTCGTTCTT 79762 Query 34434 GTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGC 34493 | || | |||||| || || ||||||||||| ||||||||||| |||||||| |||| Sbjct 79761 GGCGTCCAGCTGCGTCTGGGCCCCCAGCTCGCAACCGAAGTACTTGGTCGGGTAGGTGGC 79702 Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 ||| || || |||||||| | || |||||| || | || |||||||||||||| Sbjct 79701 CGGCCGGTTCAGGGCCTTGGCCACCTCCCCCATGTTTACCAGCACCGTCTTGATGCCGTT 79642 Query 34554 GCCCTTTCCTTCGACCT 34570 |||||| || || |||| Sbjct 79641 GCCCTTGCCCTCCACCT 79625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410982498415556