Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq16628 82.4 1e-10 >seq16628 Length=231947 Score = 82.4 bits (90), Expect = 1e-10 Identities = 215/319 (67%), Gaps = 17/319 (5%) Strand=Plus/Minus Query 180544 TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCA 180603 |||| ||||||| ||| | ||||| | || |||||||||||| | ||| ||||| Sbjct 230996 TCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTTCAATGGCGTCATTTTGGAGCCAC 230937 Query 180604 ATATATTGACTGTGATACCAACTAT---ATCGGGCAAGGTATAGACCAATTAAGCCAAG- 180659 |||| ||| | || ||||| | || ||||| | || ||| | | |||| Sbjct 230936 CTATAGAAACTCGCACACAGACTATGGAAACG---AAGGTGTTGATCAAATTA--CAAGA 230882 Query 180660 -TTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGTTGGAAT 180718 | | |||| || |||||| ||||| | ||| |||| || || | |||||| Sbjct 230881 CTCGTTGAAATCATCAAAAATGATCCCAACGACCGCCGAATGATATTATGTTCGTGGAAT 230822 Query 180719 GTATCACA-ATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGT 180777 | || | |||| | | |||| || ||||||||||||||||||| ||| || || || Sbjct 230821 CCAACAGATATTAAGAAA-ATGGTCCTACCACCATGTCACTGTTTGGCACAGTTCTACGT 230763 Query 180778 TAGAA-ATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAG 180836 ||| || | | | | || ||||||||||| | ||||| ||| | ||||| | Sbjct 230762 -AGACGATGA---TGAGCTCTCGTGTCAATTGTATCAGCGTTCTGCCGATATGGGATTGG 230707 Query 180837 GTGTACCATATAATATTGC 180855 ||||||| | ||| ||||| Sbjct 230706 GTGTACCGTTTAACATTGC 230688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652253491028000