Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq104045 179 3e-39 seq165536 114 1e-19 seq285004 89.7 4e-12 >seq104045 Length=66510 Score = 179 bits (198), Expect = 3e-39 Identities = 706/1095 (64%), Gaps = 23/1095 (2%) Strand=Plus/Plus Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497 || || || |||||||||| || || || || | ||| || || || ||||| | || Sbjct 24023 AGGATGCCGTTGGCATCCAGGTCGAAGGTCACCTGAATCTGGGGCACTCCTCTTGGTGCC 24082 Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557 |||||||| || || | ||| || ||||| | || || ||||| | || Sbjct 24083 GGTGGGATGCCCATCAGGTCAAAAGTGCCCAGGAGGTGGTTGTCCTTAGTCATGGCCCGC 24142 Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 || || ||||| | ||| || || || ||||||| || |||| || || || ||| Sbjct 24143 TCGCCTTCGAACACTTGAATGGTGACGCCAGTTTGGTTGTCTGCGTACGTCGTGAATGTC 24202 Query 281618 CTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCA 281677 ||||| | || ||||| || |||| | || | ||| || | ||| | |||||| Sbjct 24203 TTGGATGTCTTGCAAGGTATGCGGCTGTTACGCTCTACAATCTTTGCCATTACACCACCT 24262 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 || ||||| | || || |||||||| | || || || || | | | | | | Sbjct 24263 GCGGTTTCGATTCCCAGTGAAAGAGGGGCAACGTCGACGAGCAACACGTCCTTGATAATA 24322 Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 ||| || | || ||||||||||||||||| || || || || |||||||||||| Sbjct 24323 TCACTCGTGTCTCCTGTTAGAATAGCTGCTTGAATCGCTGCTCCGTAAGCAACAGCTTCA 24382 Query 281798 TCAGGATTAACAGTTTCAT--TTAGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTG 281853 || ||||| | | ||| ||| | ||||||||||| || | ||| || || | Sbjct 24383 TCGGGATTGATGG--ACATGGCTAGGTCCTTACCATTGAAGAAGTCCTTG--AGTAGCT- 24437 Query 281854 TCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 281912 ||| | | | || || || | ||||| || || | || || ||||| | || || | Sbjct 24438 TCTGAATTCTTGGGATGCGCGTAGATCCGCCCACCAGCACGATCTCATGTATTTGAGACT 24497 Query 281913 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGT 281972 | | || ||||| ||| | |||| || || ||||| | | | || | || Sbjct 24498 TTCCGAGCTTTGAGTCCTGGAGTGCTTTCTCTACAGGTTCCAAGGTACTGCGGAATAGGT 24557 Query 281973 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCG 282031 | ||| | ||||||||| | ||||| || | || | || || |||||||| || Sbjct 24558 CCATACACATTTCTTCGAACCTGGCTCTTGTGATTTTG-CTGTAGAAGTCAATTCCATCA 24616 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 || | | || | |||||| | | || || || |||| || || |||||| Sbjct 24617 AAGAGTGCGTCGATTTCAATGCTGGCTTCTGTGCTGCTCGAGAGTGTTCGCTTTGCACGT 24676 Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATCTGTTTTATA 282150 || || || || || || | || | |||| | | || ||| |||| || || | Sbjct 24677 TCGCAAGCAGTTCTCAGGCGTCTGATGGCTCTCG-TGTTTGTTTTCAGGTCACGCTTGTG 24735 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 ||| || |||| ||||| || | | | || || || ||||| || ||||| || || Sbjct 24736 TTTCCTTGTGAACTCTTCGACGAAGTAGTTCACCAGCCGGTTATCGAAGTCTTCCCCCCC 24795 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCAAGAGACAA 282267 | | || | ||||| || | | || | ||| | | || || |||| || | Sbjct 24796 GAGATGCGTGTCTCCTGCTGTGGAGCGAACCTCGAACATTGAACCCTCGTCAATAGTGAG 24855 Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 || | ||||| || || ||||||| || || || || || || |||| | | | Sbjct 24856 AATGGACACATCGAAAGTGCCTCCACCCAAGTCGAATATTAGCACGTT--TTTC-TCGCC 24912 Query 282328 TT---GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 282384 || |||| || || | || || |||| ||| || || || || ||||| || || | Sbjct 24913 TTTCAGGTTCTTGTCCAAGCCGTAAGCAAGAGCGGCTGCGGTGGGCTCATTGATGATGCG 24972 Query 282385 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 | || || || || ||||| ||| || ||||| ||||| |||| || || ||||| Sbjct 24973 AAGTACGTTGAGGCCCGCAATAGCTCCGGCGTCTTTCGTGGCCTGTCGCTGAGAGTCGTT 25032 Query 282445 AAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGC 282504 || || ||||| || || || || |||||| | || | || || | |||||| || Sbjct 25033 GAAGTAAGCAGGCACGGTGATTACCGCATCTTTGACGGCATTACCGAGATAAGCCTCGGC 25092 Query 282505 TGTTTGTTTCATTTT 282519 ||||| |||||| || Sbjct 25093 TGTTTCTTTCATCTT 25107 >seq165536 Length=484117 Score = 114 bits (126), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 |||||||| ||||||||||| ||||| || || || |||||| |||| || || | ||| Sbjct 103356 AAACCGTAAGCAAGAGCTGCAGCAGTCGGCTCGTTGATTATTCTAAGGACCTCAAGACCT 103415 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 || |||||| | | ||| |||||||| | |||||| |||| |||||| || ||||| Sbjct 103416 GCTATTTTACCGGCATCTTTCGTTGCTTGACGCTGTGCATCATCAAAATAAGCAGGTACG 103475 Query 86236 GTAATAACTGCTT 86248 ||||| ||||||| Sbjct 103476 GTAATTACTGCTT 103488 >seq285004 Length=64524 Score = 89.7 bits (98), Expect = 4e-12 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 282342 |||||| || |||| || || | ||| | ||| | || |||| | || || || Sbjct 20724 GGTTCCTCCTCCCAAGTCGAAGACAAGAATGTTCTTCTCGCCCTCTT---TCTTGTCCAG 20668 Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 ||| || |||| |||||||| || ||||| || || || | || ||||| |||||||| Sbjct 20667 ACCGTAGGCAATGGCAGCAGCTGTGGGTTCGTTGATGATACGCATCACATTGAGACCAGC 20608 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 ||| |||| ||||| || |||||||| | || | |||||| || || || || || || Sbjct 20607 AATGGTTCCGGCATCCTTGGTGGCTTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGT 20548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3722489904273192