Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq181696 275 2e-68 seq336791 91.5 5e-13 >seq181696 Length=1306 Score = 275 bits (304), Expect = 2e-68 Identities = 378/526 (72%), Gaps = 12/526 (2%) Strand=Plus/Minus Query 188674 TTAGCTGTATCAGTTTATAATCATTATAAGCGCATT-AATGCTCTTAATGaaaaatcaaa 188732 ||||| ||| | |||||||| ||||||||| | || ||| ||| | |||| Sbjct 879 TTAGCAGTAGCGGTTTATAACCATTATAAGAGACTTGAAT-------ATGTACAATCCGG 827 Query 188733 aaatgatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTC 188792 ||| |||||| | || | || || || ||| || | || | || ||||| ||||| Sbjct 826 CAATAATGATGTTG---AGCTTAATAAGTCGAATATTTTATTGATCGGTCCTACCGGTTC 770 Query 188793 AGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTC 188852 ||| ||||| ||| |||||||||| | ||| | || ||| | |||||| | |||| | Sbjct 769 AGGAAAAACTTTACTTGCTCAAACGCTTGCTAAAATTTTAGACGTACCTTTTACTATGGC 710 Query 188853 TGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCT 188912 ||||| ||||||||||| ||||| |||||||| ||||||||||| || || |||| || Sbjct 709 GGATGCTACTTCTTTAACGGAAGCCGGTTATGTCGGTGAAGATGTTGAGAATATATTACT 650 Query 188913 TCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATAT 188972 || ||| | ||||||||| | |||| | | ||| || | || || | ||||| Sbjct 649 ACGCTTATTGATAGCAGCTGAGTTTAATATAGCAAAAGCACAAAGAGGTATAATTTATAT 590 Query 188973 CGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATC 189032 || || || ||||||||||| | ||||| || | | || ||||| || |||||||| Sbjct 589 TGACGAGGTTGATAAAATTGCCCGCAAATCGGAGAATCCTTCTATTACACGGGATGTATC 530 Query 189033 TGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCC 189092 || |||||||||||||| || ||| | ||||| || ||||| |||||||| || || Sbjct 529 GGGTGAAGGAGTACAGCAGGCATTACTTAAAATTATGGAAGGAACAGTTGCTTCTGTGCC 470 Query 189093 TCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGA-AATAGATACAACTAATA 189151 ||||||||| ||| | |||||||| || ||||| | | | ||||||| | |||| Sbjct 469 TCCTCAAGGCGGTAGGAAACACCCGCAACAAGATTTCGTACAGGTTAGATACTTCAAATA 410 Query 189152 TCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTAT 189197 |||| |||||| ||||| || ||| || |||| | |||||| Sbjct 409 TCTTATTTATTTGCGGTGGTGCTTTTATGGGGATTGATAGCATTAT 364 >seq336791 Length=793321 Score = 91.5 bits (100), Expect = 5e-13 Identities = 230/339 (68%), Gaps = 17/339 (5%) Strand=Plus/Plus Query 309202 GATATTGCTTTAGGGAATGG---TATACCAAAAGGTCGTATTATTGAGTTTTTTGGGGCA 309258 ||||| ||| | |||| ||| | | || ||||| | || || ||| ||||||| | Sbjct 743939 GATATAGCTCTTGGGATTGGCGGTGTTCCTAAAGGCAGAATAATCGAGATTTTTGGTCCT 743998 Query 309259 GAATCTTCAGGTAAAAC-ACTTT-GCGCTACACGAGCAATGGCTCAAGTGCAACAACAAG 309316 ||| ||||||||||| ||||| | ||||| ||| || ||| || || ||| Sbjct 743999 GAAAGCTCAGGTAAAACTACTTTAACACTACA--TTTAATTGCCGAAGCACAGAAAAAAG 744056 Query 309317 GTGGTATTTGTGCTTTAATAGATATGGAACATGCATTCGATCCTAGTTTTGCCGCAAAAT 309376 | |||| |||||||| || ||| || |||||||| || ||| || ||| ||||| Sbjct 744057 GCGGTACATGTGCTTTTATTGATGCTGAGCATGCATTAGACCCTGCTTATGCTAAAAAAT 744116 Query 309377 TAGGTTTAAACTCTGATGA-TTTATTCTTATCACAACCAGAT-CATATGCAAGATGCTTT 309434 |||| |||| |||||| ||||| || ||||| || ||| || || || | || | Sbjct 744117 TAGGCGTAAATATTGATGAGCTTATTATT-TCACAGCCCGATACAGGTG-AACAAGCCCT 744174 Query 309435 TGCGGTAATT---GATGCATTAATTGATTCTGGCGGTGTAGATATGATTGTTTTAGACTC 309491 | |||| ||| | |||||| ||| |||||| | |||||||| | |||| Sbjct 744175 ---AGAAATTGCCGATACGTTAATTCGTTCCGGCGGTATTGATATGATAATAATAGATAG 744231 Query 309492 AGTTGCAGCGCTTGTTCCGAAAGAGGAGCTTGAAGGTGA 309530 ||||| || | || |||||| ||| |||| || || Sbjct 744232 TGTTGCGGCTTTAGTACCGAAATCAGAGATTGAGGGCGA 744270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1584374111106816