Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq181696 275 2e-68
seq336791 91.5 5e-13
>seq181696
Length=1306
Score = 275 bits (304), Expect = 2e-68
Identities = 378/526 (72%), Gaps = 12/526 (2%)
Strand=Plus/Minus
Query 188674 TTAGCTGTATCAGTTTATAATCATTATAAGCGCATT-AATGCTCTTAATGaaaaatcaaa 188732
||||| ||| | |||||||| ||||||||| | || ||| ||| | ||||
Sbjct 879 TTAGCAGTAGCGGTTTATAACCATTATAAGAGACTTGAAT-------ATGTACAATCCGG 827
Query 188733 aaatgatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTC 188792
||| |||||| | || | || || || ||| || | || | || ||||| |||||
Sbjct 826 CAATAATGATGTTG---AGCTTAATAAGTCGAATATTTTATTGATCGGTCCTACCGGTTC 770
Query 188793 AGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTC 188852
||| ||||| ||| |||||||||| | ||| | || ||| | |||||| | |||| |
Sbjct 769 AGGAAAAACTTTACTTGCTCAAACGCTTGCTAAAATTTTAGACGTACCTTTTACTATGGC 710
Query 188853 TGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCT 188912
||||| ||||||||||| ||||| |||||||| ||||||||||| || || |||| ||
Sbjct 709 GGATGCTACTTCTTTAACGGAAGCCGGTTATGTCGGTGAAGATGTTGAGAATATATTACT 650
Query 188913 TCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATAT 188972
|| ||| | ||||||||| | |||| | | ||| || | || || | |||||
Sbjct 649 ACGCTTATTGATAGCAGCTGAGTTTAATATAGCAAAAGCACAAAGAGGTATAATTTATAT 590
Query 188973 CGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATC 189032
|| || || ||||||||||| | ||||| || | | || ||||| || ||||||||
Sbjct 589 TGACGAGGTTGATAAAATTGCCCGCAAATCGGAGAATCCTTCTATTACACGGGATGTATC 530
Query 189033 TGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCC 189092
|| |||||||||||||| || ||| | ||||| || ||||| |||||||| || ||
Sbjct 529 GGGTGAAGGAGTACAGCAGGCATTACTTAAAATTATGGAAGGAACAGTTGCTTCTGTGCC 470
Query 189093 TCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGA-AATAGATACAACTAATA 189151
||||||||| ||| | |||||||| || ||||| | | | ||||||| | ||||
Sbjct 469 TCCTCAAGGCGGTAGGAAACACCCGCAACAAGATTTCGTACAGGTTAGATACTTCAAATA 410
Query 189152 TCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTAT 189197
|||| |||||| ||||| || ||| || |||| | ||||||
Sbjct 409 TCTTATTTATTTGCGGTGGTGCTTTTATGGGGATTGATAGCATTAT 364
>seq336791
Length=793321
Score = 91.5 bits (100), Expect = 5e-13
Identities = 230/339 (68%), Gaps = 17/339 (5%)
Strand=Plus/Plus
Query 309202 GATATTGCTTTAGGGAATGG---TATACCAAAAGGTCGTATTATTGAGTTTTTTGGGGCA 309258
||||| ||| | |||| ||| | | || ||||| | || || ||| ||||||| |
Sbjct 743939 GATATAGCTCTTGGGATTGGCGGTGTTCCTAAAGGCAGAATAATCGAGATTTTTGGTCCT 743998
Query 309259 GAATCTTCAGGTAAAAC-ACTTT-GCGCTACACGAGCAATGGCTCAAGTGCAACAACAAG 309316
||| ||||||||||| ||||| | ||||| ||| || ||| || || |||
Sbjct 743999 GAAAGCTCAGGTAAAACTACTTTAACACTACA--TTTAATTGCCGAAGCACAGAAAAAAG 744056
Query 309317 GTGGTATTTGTGCTTTAATAGATATGGAACATGCATTCGATCCTAGTTTTGCCGCAAAAT 309376
| |||| |||||||| || ||| || |||||||| || ||| || ||| |||||
Sbjct 744057 GCGGTACATGTGCTTTTATTGATGCTGAGCATGCATTAGACCCTGCTTATGCTAAAAAAT 744116
Query 309377 TAGGTTTAAACTCTGATGA-TTTATTCTTATCACAACCAGAT-CATATGCAAGATGCTTT 309434
|||| |||| |||||| ||||| || ||||| || ||| || || || | || |
Sbjct 744117 TAGGCGTAAATATTGATGAGCTTATTATT-TCACAGCCCGATACAGGTG-AACAAGCCCT 744174
Query 309435 TGCGGTAATT---GATGCATTAATTGATTCTGGCGGTGTAGATATGATTGTTTTAGACTC 309491
| |||| ||| | |||||| ||| |||||| | |||||||| | ||||
Sbjct 744175 ---AGAAATTGCCGATACGTTAATTCGTTCCGGCGGTATTGATATGATAATAATAGATAG 744231
Query 309492 AGTTGCAGCGCTTGTTCCGAAAGAGGAGCTTGAAGGTGA 309530
||||| || | || |||||| ||| |||| || ||
Sbjct 744232 TGTTGCGGCTTTAGTACCGAAATCAGAGATTGAGGGCGA 744270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1584374111106816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |