Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_024329.1 Length=39425 Score E Sequences producing significant alignments: (Bits) Value seq324894 96.9 9e-16 >seq324894 Length=394762 Score = 96.9 bits (106), Expect = 9e-16 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 20491 GAAGATGCTTTTATTGACTTATCTTTTGAAATGGGTGGAGTAGAAGGACTAACAGCAGAG 20550 || ||||| |||||||| | |||||||| | || || | || ||| |||| ||| | Sbjct 113769 GAGGATGCCTTTATTGAACTTGCTTTTGAAGTTGGCGGTATTGAGGGATTAACGGCATAT 113828 Query 20551 GATATGAAACTTTATATTCGTTATATTTGTGATAGACGCTTATTGCAGTTAGGACTAAAA 20610 || | | || ||||||||||||||| || | || ||| ||||| ||||||| ||| Sbjct 113829 GAAGTAAGACAATATATTCGTTATATTGCCGACCGTCGTTTAATGCAGCTAGGACTCAAA 113888 Query 20611 ACAAACTATGGTGTTAAGGATAACCCCTTACCTTGGATTGATGAGTTATTAGGTAGTGTT 20670 ||| || || ||||||| | |||||| ||||||| | || | || Sbjct 113889 GATGTATATTTGGTAAATCATAACCCGCTTCCTTGGCTTGATGAAATGCTAAACGGAGTC 113948 Query 20671 GTTCATACTAACTTCTTTGAAGCTCGTTCTACTGAATATTCAAAAG 20716 | ||||| ||||| |||||| | | | |||||||||||||||| Sbjct 113949 GAACATACGAACTTTTTTGAAAATAGAGCAACTGAATATTCAAAAG 113994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125485379106648