Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq118272 149 1e-30 >seq118272 Length=246527 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | ||| || || ||||||||||| || || || || || || | | |||| Sbjct 51222 CGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCG 51163 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | ||||| || ||||| || |||||||| Sbjct 51162 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTG 51103 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||| || ||||| || || ||| | || || || || | ||| || Sbjct 51102 TCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATG 51043 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| || |||||||| || ||||| Sbjct 51042 GTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || || ||||| |||||||| || || || || || || | | ||| Sbjct 50766 CGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGACCA 50707 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || | || ||||| ||||| || |||||||| Sbjct 50706 TCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTG 50647 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| || || || || || || ||||| ||| | || || || |||| || || Sbjct 50646 TCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATA 50587 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 50586 GTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || || || || |||||||| || || || || || || | | ||| Sbjct 50994 CGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCG 50935 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| || || ||||| || | || || || || || || || ||||| Sbjct 50934 TCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTG 50875 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| |||||||| || || ||||| || |||||| | || || ||||| | || || Sbjct 50874 TCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATG 50815 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||||||||| || ||||| Sbjct 50814 GTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || || || |||||||| || || || || || Sbjct 50094 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 50035 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || ||||| || || || ||||| || | || ||||| || || Sbjct 50034 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 49975 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || || || || || || ||||| ||||| || | || || || Sbjct 49974 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACC 49915 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| ||||| |||||||| Sbjct 49914 TCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| || || || || ||||| || || || || || || | | || Sbjct 50538 CGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA 50479 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||| || || || ||||| | | || ||||| || || || |||||||| Sbjct 50478 TCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTG 50419 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || ||||| ||||||||||| || ||| | || || ||||||| || || Sbjct 50418 TCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATG 50359 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || || || |||||||| Sbjct 50358 GTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || ||||| || | ||| || || || || ||||| || || || || || Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||||| || || || || || ||||| || | ||| || || || || Sbjct 49806 AAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 49747 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||||||||| || || || ||||||||||| || | || || || Sbjct 49746 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACC 49687 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || |||| || || || || |||||||| Sbjct 49686 TCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 113 bits (124), Expect = 9e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || || || || || || || ||||| || || ||| || Sbjct 51451 ACGCAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCC 51392 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || |||||||||||||| || | || || || || || || |||||||| Sbjct 51391 ATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTT 51332 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || || || || | || || || |||| || || Sbjct 51331 GTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGAT 51272 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || |||| ||||| || || || |||||| Sbjct 51271 GGTCTTCCCCGTCAGGGTCTTCACGAAGATTTGCATT 51235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977179115897788