Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq16628 161 2e-34 >seq16628 Length=231947 Score = 161 bits (178), Expect = 2e-34 Identities = 549/852 (64%), Gaps = 5/852 (1%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| ||||| || || || | |||||||| ||||||| | ||||| | | Sbjct 200439 ACTACTTTGGATTTAAGACATTGGAACGTGCGCATTTACTCAAGATTAATGGGAAAGTTG 200380 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 | || || || ||||||||| || | || ||| ||||||| ||||| || | ||| ||| Sbjct 200379 TAGAGCGGCCACAACACATGCTTATGCGCGTTTCGATTGGCATTCACGGGGACGATCTTA 200320 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 || |||||| || | | | | |||| || || || |||| | Sbjct 200319 GCAGTGCGATTGAAACGTACAACCTCATGTCTGAAAAATGGTTTACGCAAGCATCTCCCA 200260 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || || ||||| || ||| | | ||| || | ||| ||| | | ||| | Sbjct 200259 CACTTTTCAACGCTGGGACTCCTAAACCGCAACTGTCGAGTTGTTTTTTATTGCAAATGA 200200 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | || ||| || ||||| || || ||| | || ||| | ||| || ||||| ||| Sbjct 200199 AAGACGATAGCATAGAAGGAATATACGATACACTGAAACAGTGTGCACTCATTTCAAAAT 200140 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 |||| ||||| || ||| || | || | ||||| | ||| | || ||| Sbjct 200139 CGGCTGGTGGAATAGGAATTAACATACACAACATTCGTGCTTCTGGAAGTTACATAGCAG 200080 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | | || ||| | || | || |||| || ||| || |||| | ||| |||| ||| Sbjct 200079 GAACAAATGGTACATCGAACGGTATTGTACCCATGCTACGAGTGTATAACAACACGGCAC 200020 Query 110722 AATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTT 110778 || || |||| ||||| || | || || | | || |||||||| ||||| | Sbjct 200019 GTTACGTCGATCAGGGTGGCAACAAAAGACCGGGAGCGATCGCCATCTATCTGGAACCGT 199960 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 |||| ||||| | || || || || || || |||||| || ||||| | Sbjct 199959 GGCACGCAGATGTGTTCGATTTTTTGGATCTAAAAAAAAATACCGGTAAAGAAGAGAGTA 199900 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | ||||||||| | ||||| | |||||||| | ||||||||||||||| | || ||| Sbjct 199899 GGGCACGTGATCTTTTTTACGGTTTGTGGATTCCCGATTTATTCATGAAAAGGGTGGAAG 199840 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 || |||| || ||||| | |||||||| || |||| || |||||||| | Sbjct 199839 AAGATGGAATATGGTCGTTGATGTGTCCACACGAAAGTCCTCACCTGCAAGATGTATACG 199780 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTT-TCGCAAACAA 111017 | |||| || ||| | ||||||| ||| | | | | || | ||| ||| ||| Sbjct 199779 GCGAAGACTTCGAAAAACTTTACGTTCGATACG-AGACGGAGAAACGTTATCGGCGTCAA 199721 Query 111018 ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 ||| || ||| |||| ||| ||| | ||||||||| |||||||| || || Sbjct 199720 GTTCGTGCACAACAACTCTGGAGTGCAATTATCGAATCACAAACGGAAACTGGTACGCCA 199661 Query 111078 TATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 ||||| || || ||||| ||| | ||||| ||||||| || | || ||||| Sbjct 199660 TATATGTTATACAAAGACGCCTGCAATAGAAAATCGAATCAAAAAAACGTCGGTACAATA 199601 Query 111138 AAGTCTAGTAAT 111149 || | ||||||| Sbjct 199600 AAATGTAGTAAT 199589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181194290237812