Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq118272 102 2e-16 >seq118272 Length=246527 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || ||||| ||||| | || ||||| ||| Sbjct 49643 CAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGCGAC 49702 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || || || || ||| ||| ||| Sbjct 49703 ACGATTGAAAACGTGAAGGCTAAGATTCAAGACAAGGAGGGGATCCCGCCCGACCAGCAA 49762 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | ||||| ||| | || ||| |||| |||||| | Sbjct 49763 CGTCTGATCTTCGCCGGCAAGCAGCTTGAAGACGGACGCACCTTGTCCGACTACAACATT 49822 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 49823 CAGAAGGAGTCCACCCTCCACCTGGT 49848 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || ||||| |||| ||||| ||| Sbjct 50099 CAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAGCGAC 50158 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| || ||||| || || ||||| ||| || || || Sbjct 50159 ACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCAGCAG 50218 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| | |||||||| | || || | |||||||| || Sbjct 50219 CGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTCGGATTACAATATC 50278 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || |||||||| || Sbjct 50279 CAGAAAGAGTCCACCCTTCACCTGGT 50304 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| |||||| || | || ||||| || |||||| Sbjct 51320 AAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGAAAG 51379 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || || ||||||||||| |||| || ||||| || || ||| Sbjct 51380 CAGTTGGAAGATGGCCGAACCCTGTCCGATTACAACATCCAAAAGGAGTCCACCCTCCAC 51439 Query 206374 CTTGT 206378 ||||| Sbjct 51440 CTTGT 51444 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || ||||| ||||| ||||||| || |||| Sbjct 50327 CAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAAGTCGAGCCCAGTGAC 50386 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| ||| || || || || ||||| || ||||| || Sbjct 50387 ACAATTGAAAATGTCAAAGCCAAA-ATCCAGGACAAGGAAGGGATCCCCCCGGATCAGCA 50445 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||||||||| ||||| | |||||||| | || || | || |||||| | Sbjct 50446 GCGTTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCCTGTCGGACTACAACAT 50505 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||| ||||| || || ||| | ||| Sbjct 50506 CCAGAAGGAGTCCACCCTACACTTGGTT 50533 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || || || || || || ||||| | ||||| || ||| || || Sbjct 50789 TTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAGTGATACCATC 50848 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| |||||| ||||| || || || ||| || ||| || | || Sbjct 50849 GAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAGCAGCGTCTC 50908 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||||||||| || || | || || || | || || | || |||||| |||||||| Sbjct 50909 ATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCAGACTACAACATCCAGAAA 50968 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||||| ||||| || ||||||| Sbjct 50969 GAGTCCACCCTTCATCTTGTGCTGCGACTTCG 51000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176225922946132