Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq16628 176 4e-39 seq118272 118 1e-21 seq368444 84.2 2e-11 >seq16628 Length=231947 Score = 176 bits (194), Expect = 4e-39 Identities = 963/1526 (63%), Gaps = 17/1526 (1%) Strand=Plus/Plus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAG-ATACACATTGCTAGTGAA 146948 ||||| || | ||||| || || | || || || | ||| |||||||||||||||| | Sbjct 198957 TGATTTACTATCTGAAATTCTCCAGAAAGTACGCGCC-GAGTATACACATTGCTAGTGTA 199015 Query 146949 AGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGC 147008 || || | | ||| ||||| || | || || || || | ||| || ||||| || Sbjct 199016 TGGTTCCATTGCCTCGTTATTACCAAGAATCTGCGCAGTAGATGCTGTTGGCATTGGTGC 199075 Query 147009 CACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068 || | | ||| || | || | || | || || |||| ||| || Sbjct 199076 TACGAGAAGACTATTGCGGATTCCAAAGCTTTTAATTCTTTCTTTTAAAGCAGACCAATC 199135 Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGG 147128 ||||| || || || || |||||||| |||||||| || | |||| | | || Sbjct 199136 CCACAGGTTTGAAGGTGTTACATTCCACATATCGTACTGAAGGATTCCTTGTGATACTGG 199195 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 ||| |||| | |||| ||| || | | || |||||| || | || | Sbjct 199196 ACTACCAGGGTACGTCTCGTACGGACCAAACTTTTTAGACAGTTCACAACTCTCTTCCAA 199255 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 |||||||| ||||| ||||| ||||| || || | | ||||| || | || Sbjct 199256 AGCTCCATAATATATTGTTTCAAAGATTTTCTTATTAATTTCACAAGCTTCGTCACAGTC 199315 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | |||| | | | | | || || ||||||||||| |||| |||| || ||||| Sbjct 199316 GAAAGGAAGTCTTAATAAAATGAAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGG 199375 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAAT 147368 |||||| ||| | ||||| | || ||||| | || ||| || || Sbjct 199376 GCGATGCCGCATGTTTGAAAGTTTCGCTTCGGGAATTGGATAATAATTAACATCGATTAT 199435 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 || || | ||| | ||| ||| |||||| | | ||| || ||||| |||| Sbjct 199436 TTTATTCAAGTTTCTAGTTACGACTCTAGTTACTTGACGCAATTTTTCAAAATCG-AAGT 199494 Query 147429 CCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGT 147488 ||| || | ||| || | |||| || || ||||| | ||| || ||||| Sbjct 199495 ---GTCCATGATAA--ACGAATCGATTCAAAGCAATCGACGCTAAATTACACACGGCAAC 199549 Query 147489 CTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCC 147548 ||| || || |||||| |||||||||| || || || || |||||||| || Sbjct 199550 CTCGTCAACGGACGTGTACTCTACGATTTCGGTACATAGATTACTACATTTTATTGTACC 199609 Query 147549 CAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCC 147608 | |||| ||||| ||| | |||||| ||||||||| | | ||| || || || Sbjct 199610 GACGTTTTTTTGATTCGATTTTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACC 199669 Query 147609 GGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCG 147668 || || ||| | ||| | || || || | || || || || | |||| Sbjct 199670 AGTTTCCGTTTGTGATTCGATAATTGCACTCCAGAGTTGTTGTGCACGAACTTGACGCCG 199729 Query 147669 ATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATC 147728 ||| || ||| | ||||| || |||| | || || || |||||||| ||| Sbjct 199730 ATAACGTTTCTCCGTCTCGTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATC 199789 Query 147729 GGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCG 147788 ||| |||| | || |||||||||| |||||| || | || | | || | Sbjct 199790 TTGCAGGTGAGGACTTTCGTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCT 199849 Query 147789 TCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTC 147848 | ||| || | ||| || | ||||| |||| | |||||| || || | | || || Sbjct 199850 TTTCATGAATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTC 199909 Query 147849 GGCGCCCATGTTGCGTTTCAAATT-AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 || | || ||| | || || | | | | | || |||||||| ||||| | Sbjct 199910 TTTACCGGTATTTTTTTTTAGATCCAAAAAATCGA-ACACATCTGCGTGCCACGGTTCCA 199968 Query 147908 TGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGACATGGCGCACCATGT 147964 |||| ||| | ||| || | | || || ||||| ||||| | || || ||| Sbjct 199969 GATAGATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGT 200028 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT 148024 ||||| |||| || | ||||||| | | ||| ||| || || || || || | Sbjct 200029 TGTTATACACTCGTAGCATGGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGT 200088 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT 148083 || || || || | | ||| | ||||| || || || || |||| | ||||| Sbjct 200089 AACTTCCAGAAGCACGAATGTTGTGTATGTTAATTCCTATTCCACCAGCCG-ATTTTGAA 200147 Query 148084 ATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCA 148143 ||| || || | || ||| ||| || || || ||||| |||| ||| | Sbjct 200148 ATGAGTGCACACTGTTTCAGTGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGC 200207 Query 148144 AGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTC 148203 | |||||||| ||| |||||| | | || || || |||||| |||||| Sbjct 200208 AATAAAAAACAACTCGACAGTTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGAT 200267 Query 148204 GCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATG-TC 148262 || ||||||||| |||||| | ||| | | ||||| ||||| || || | | | || Sbjct 200268 GCTTGCGTAAACCATTTTTCAGACATGAGGTTGTACGTTTCAATCGCA-CTGCTAAGATC 200326 Query 148263 GTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTG 148322 ||| ||||||||||| | || |||||||| |||||||| ||||| || || |||||| Sbjct 200327 GTCCCCGTGAATGCCAATCGAAACGCGCATAAGCATGTGTTGTGGCCGCTCTACAACTTT 200386 Query 148323 ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATC 148382 || |||||||| | || || ||| | || || | |||||||| || |||| Sbjct 200387 CCCATTAATCTTGAGTAAATGCGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATT 200446 Query 148383 AAAATCTAGCTCGTAAGCGATGGCCG 148408 ||||| | |||||| |||||| || Sbjct 200447 GAAATCGCGATCGTAAACGATGGACG 200472 >seq118272 Length=246527 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||| || | | | ||||| || ||||||||||||||| || ||| Sbjct 49860 CGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTG 49801 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||| ||||| || |||| |||| ||||| || || || || || || || Sbjct 49800 CGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCC 49741 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||| || |||| | ||| | || ||| |||||||||| |||| | Sbjct 49740 TCCTTGTCTTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGC 49681 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | ||||| || ||||| ||||| | ||| |||||||||||| Sbjct 49680 GTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATGACT 49636 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| ||| | | | |||||||| || ||||||||||| || ||| Sbjct 50773 ACGCAGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGT 50714 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||| || || | | |||| |||||||| ||||| ||||| || || Sbjct 50713 GCGACCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACC 50654 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| |||| | || | || || | |||||||| || | Sbjct 50653 TTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAG 50594 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || |||||||| || | ||| ||||||||| Sbjct 50593 TGTGATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATG 50551 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||| || | | | |||||||| || || ||||| || || ||| Sbjct 50316 CGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTT 50257 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||||||||| || |||| | |||| |||||||| ||||| ||||| |||||| Sbjct 50256 CGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCT 50197 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| |||| | || | || ||| | |||||||| || | Sbjct 50196 TCCTTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGT 50137 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || ||||| || || ||||| | ||| ||||||||| Sbjct 50136 GTGATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCATG 50095 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | | || ||||| || ||||||||||| || |||||| Sbjct 51222 CGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGACAGGGTACGACCG 51163 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| | |||| ||||||||||| || ||||| || ||||| || Sbjct 51162 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGAATCCCTTCCTTG 51103 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | ||| | || || | ||||| || |||| || | Sbjct 51102 TCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGACCTCGAGAGTAATG 51043 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||||||||||| ||||| |||||| Sbjct 51042 GTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCATG 51007 Score = 109 bits (120), Expect = 5e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||| || | | | |||||||| || |||||||||||| | |||| Sbjct 50088 CGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTA 50029 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || ||||| || || |||| |||| |||||||| ||||| || || || || Sbjct 50028 CGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCC 49969 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||| |||| | ||| | || ||| ||||||| || |||| | Sbjct 49968 TCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGC 49909 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | ||| || ||||| || || || | |||||||||||| || Sbjct 49908 GTGATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGCCT 49864 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| |||| | | ||||| || || ||||||||||| || ||| || |||||| Sbjct 50533 AACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 50474 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| || || |||| |||| | |||||| ||||| || || || ||||| || || Sbjct 50473 GAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTG 50414 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| ||| | | ||| | || || | ||||| ||||| | ||| | ||||| Sbjct 50413 GATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACTTCCAGCGTGATGGTTTT 50354 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||| | ||| ||||||||| Sbjct 50353 GCCGGTGAGGGTTTTGACGAAGATCTGCATG 50323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | |||||||| || ||||||||||| || || || Sbjct 50994 CGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCG 50935 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||| ||||| |||| |||| |||||||| || || || || ||||| || || Sbjct 50934 TCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTG 50875 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| || | | ||| | ||||| | ||||| ||||||| || | Sbjct 50874 TCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGTGATG 50815 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||||||| |||| || || |||||| Sbjct 50814 GTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCATG 50779 >seq368444 Length=413118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||||||||| |||| |||| | | ||||| || || ||||||||||| || ||| Sbjct 77704 ACGCAAGCGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 77763 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || || | | |||| |||||||| || || || || ||||| Sbjct 77764 GCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCC 77823 Query 132022 T 132022 | Sbjct 77824 T 77824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474409899681120