Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq118272 100 3e-16
seq16628 84.2 2e-11
>seq118272
Length=246527
Score = 100 bits (110), Expect = 3e-16
Identities = 151/213 (71%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | |||||||| || | ||||| || | ||||| ||||||| || |||
Sbjct 50779 CATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAG 50838
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| ||||| | || || ||| || || || ||||| || || || || ||
Sbjct 50839 TGATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 50898
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351
||| | ||||| | || ||||||||||||||| || | | | ||||| || |||
Sbjct 50899 GCAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCA--GACTAC 50956
Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|| || || ||||| |||||| ||||| | |||
Sbjct 50957 AACATCCAGAAAGAGTCCACCCTTCATCTTGTG 50989
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || || ||||| | ||||| || | ||||| | || || || |||
Sbjct 50095 CATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAG 50154
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||| || |||||| | || || |||||| || || || || || || ||||||||
Sbjct 50155 CGACACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCA 50214
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351
||| | || || | | |||||| || |||||||||| ||| |||| ||||||
Sbjct 50215 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTC--GGATTAC 50272
Query 25352 AATATTCAAAAAGAATCCACCATTCA 25377
||||| || ||||| |||||| ||||
Sbjct 50273 AATATCCAGAAAGAGTCCACCCTTCA 50298
>seq16628
Length=231947
Score = 84.2 bits (92), Expect = 2e-11
Identities = 155/223 (70%), Gaps = 7/223 (3%)
Strand=Plus/Plus
Query 137830 GGACACTCGTCGGGACACATCAACGACCATTTTCC-TC-CCGTCCTAACCCTTTCCATGA 137887
|||| |||| |||||||||||||||||| |||| || | ||| ||||||| |||||
Sbjct 199800 GGACTTTCGTGTGGACACATCAACGACCATATTCCATCTTCTTCC--ACCCTTTTCATGA 199857
Query 137888 ACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCTTCGGCGCCCA 137947
| | | || |||| | | | ||| ||| || || ||| | | ||||| ||
Sbjct 199858 ATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGG 199917
Query 137948 TATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAGACGG 138007
|||| ||||| |||||||||| || | ||| || ||||| || || | ||||| ||
Sbjct 199918 TATTTTTTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGG 199977
Query 138008 CCATAGCTCC---TTTTCTTTTACCGCCTTGATCCACATGACG 138047
| || ||||| | || | || || || ||||| || | |||
Sbjct 199978 CGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACG 200020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443038664749440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |