Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq118272 100 3e-16 seq16628 84.2 2e-11 >seq118272 Length=246527 Score = 100 bits (110), Expect = 3e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | |||||||| || | ||||| || | ||||| ||||||| || ||| Sbjct 50779 CATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCCTCGAAGTTGAGCCCAG 50838 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || ||| || || || ||||| || || || || || Sbjct 50839 TGATACCATCGAAAACGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 50898 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | ||||| | || ||||||||||||||| || | | | ||||| || ||| Sbjct 50899 GCAGCGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACGCTGTCA--GACTAC 50956 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || || ||||| |||||| ||||| | ||| Sbjct 50957 AACATCCAGAAAGAGTCCACCCTTCATCTTGTG 50989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | ||||| || | ||||| | || || || ||| Sbjct 50095 CATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACACTGGAGGTGGAGCCCAG 50154 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || |||||| | || || |||||| || || || || || || |||||||| Sbjct 50155 CGACACAATCGAGAACGTGAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCCGATCA 50214 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | || || | | |||||| || |||||||||| ||| |||| |||||| Sbjct 50215 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGAACCCTGTC--GGATTAC 50272 Query 25352 AATATTCAAAAAGAATCCACCATTCA 25377 ||||| || ||||| |||||| |||| Sbjct 50273 AATATCCAGAAAGAGTCCACCCTTCA 50298 >seq16628 Length=231947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/223 (70%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 137830 GGACACTCGTCGGGACACATCAACGACCATTTTCC-TC-CCGTCCTAACCCTTTCCATGA 137887 |||| |||| |||||||||||||||||| |||| || | ||| ||||||| ||||| Sbjct 199800 GGACTTTCGTGTGGACACATCAACGACCATATTCCATCTTCTTCC--ACCCTTTTCATGA 199857 Query 137888 ACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCTTCGGCGCCCA 137947 | | | || |||| | | | ||| ||| || || ||| | | ||||| || Sbjct 199858 ATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTTACCGG 199917 Query 137948 TATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAGACGG 138007 |||| ||||| |||||||||| || | ||| || ||||| || || | ||||| || Sbjct 199918 TATTTTTTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATAGATGG 199977 Query 138008 CCATAGCTCC---TTTTCTTTTACCGCCTTGATCCACATGACG 138047 | || ||||| | || | || || || ||||| || | ||| Sbjct 199978 CGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACG 200020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443038664749440