Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq329878 149 7e-31 seq8286 104 3e-17 seq266908 95.1 1e-14 seq16628 95.1 1e-14 >seq329878 Length=295997 Score = 149 bits (164), Expect = 7e-31 Identities = 112/132 (85%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| Sbjct 113618 TCCACGTGGTTGAGGTAGATGTGGGCGTCCCCCAGGGTGTGCACAAAGTCCCCGGGCCGT 113559 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 |||||||| | ||||||||||| ||| || || | ||||||||| |||||||| || Sbjct 113558 TTCCCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCAATGTTGAAAGGC 113499 Query 147046 ACCCCCAGGCCC 147057 || ||||||||| Sbjct 113498 ACGCCCAGGCCC 113487 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 147361 AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTA 147420 || |||| | |||| |||| | | |||||||||| || || | || |||||||| Sbjct 89052 AGGAACTGGCGGGAGCCGTTGCCATCCCAGATGCGAACGCCACGCTCAGACAGCTCCTTG 88993 Query 147421 GAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACC 147480 | || || || ||||| | ||||||||||||||| |||| |||||| | ||| |||||| Sbjct 88992 GCGTTGGTTGACCCCCGAAGGAACCAGAGCAGCTCTTCCACAACCCCTCGCCAGAAGACC 88933 Query 147481 CTCTTGGTGGTCAGCA 147496 | |||||| ||||||| Sbjct 88932 CGCTTGGTCGTCAGCA 88917 >seq8286 Length=1257 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 146922 GGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGG 146981 || |||||||||||| ||||| | ||| || || || | |||| ||||| || || || Sbjct 433 GGACTCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGG 492 Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 || ||||| | |||| ||||| ||||| || | ||| || || ||||| || Sbjct 493 TCGTTTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAA 552 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||| |||||||| | || | ||| ||||| || ||||||||||| | || Sbjct 553 CGGTACACCCAATCCCATGTCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATC 612 Query 147102 GGCCACGTAAAACTG 147116 | | ||||| ||||| Sbjct 613 GTCTACGTAGAACTG 627 >seq266908 Length=1092028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 146922 GGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGG 146981 || ||||| |||||| ||||| | ||| || || || | |||| ||||| || || || Sbjct 125355 GGACTCCATGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGG 125414 Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 || ||||| | |||| ||||| ||||| || | ||| || || ||||| || Sbjct 125415 TCGTTTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAA 125474 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||| |||||||| | || | ||| |||| || ||||||||||| | || Sbjct 125475 CGGTACACCCAATCCCATGTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATC 125534 Query 147102 GGCCACGTAAAACTG 147116 | | ||||| ||||| Sbjct 125535 GTCTACGTAGAACTG 125549 >seq16628 Length=231947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 146922 GGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGG 146981 || |||||||||||| ||||| | ||| || || || | |||| ||||| || || || Sbjct 230579 GGACTCCACGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGG 230638 Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 || ||||| | |||| ||||| ||||| || | ||| || || ||||| || Sbjct 230639 TCGTTTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAA 230698 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || |||| ||||| || | || | ||| |||| || ||||||||||| | || Sbjct 230699 CGGTACACCCAATCCCATATCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATC 230758 Query 147102 GGCCACGTAAAACTG 147116 | | ||||| ||||| Sbjct 230759 GTCTACGTAGAACTG 230773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580793073148800