Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq103207 172 8e-37 seq202380 143 4e-28 seq297272 140 5e-27 seq99657 136 6e-26 seq12212 136 6e-26 seq128792 122 1e-21 seq2134 100 4e-15 seq149517 98.7 1e-14 seq255993 95.1 2e-13 seq88354 91.5 2e-12 seq353048 86.0 9e-11 seq128081 86.0 9e-11 >seq103207 Length=1829 Score = 172 bits (190), Expect = 8e-37 Identities = 288/414 (70%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 332921 GACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGG 332980 |||||||||||||||||||| |||| |||||| || | | |||||||||| || Sbjct 742 GACGTGTTGCAGGCCAGGGCGAACCTCGTCGTCTTTGAGTAGATTTCCATGGTACGGCGC 801 Query 332981 AGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTG- 333039 || ||||||||||| | || | || ||| || |||||||||||||||| |||||| Sbjct 802 AGAGCCTGTTGGGCTCCTTCTGTCATGCTGTCCGCTTCGTCGAGGATGATGACCTTGTGT 861 Query 333040 GCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGAC 333099 ||||| | || ||| ||| ||||| ||| ||||| | ||||| ||||| Sbjct 862 TTGCCCG-GTGGAAGAGTTACCTTTTTCTGAGCGAACATCTTGATTTTGTTGCGAACGAC 920 Query 333100 GTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACC 333159 ||| | ||| | |||| ||| |||||||||||||| ||||| ||| | | | || Sbjct 921 GTCGATGCCTCTGTCGTTCGAGGCGTTGAGTTCGAGGACGGCGTCGCGGAACGAAGGGCC 980 Query 333160 CAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGC 333219 | || | | || ||||||| |||| | ||||| |||||| ||||| || |||| Sbjct 981 GAGAAGAATCCTCGACAGGCACAGGATGGTGGTGGTTTTGCCCACTCCGGGAGGGCCCGA 1040 Query 333220 CAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTG 333279 || | || ||| || | |||||| ||| || | | | | ||| ||||| || | Sbjct 1041 AAGGATGACGTTCGGGACGTTGCCCTCGCGGGAAAACACTTCGAGTCGGGCAATGGTCTC 1100 Query 333280 CTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGG 333333 |||||||| || || |||| || || ||||||||||||| ||| || Sbjct 1101 TTCGTTGCCCACGATCTCGTTGAATTTGGCCGGACGGTACTTTTCGACCCAGGG 1154 >seq202380 Length=518935 Score = 143 bits (158), Expect = 4e-28 Identities = 173/234 (74%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||| ||||| || ||||| ||||| || |||| | ||||| ||| || Sbjct 370565 ATCTATAAGGTCCTGAAGCAAGTGCATCCGGACACCGGCGT------CTCCAGCAAAGCC 370512 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| |||||||||||||| |||| | |||| ||||||| || Sbjct 370511 ATGTCCATCATGAACAGCTTTGTCAACGACATCTTCGAGAGGATCGCAGCCGAGGC--GT 370454 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| ||||||| || ||||||||| ||| ||| || || ||| |||||||||||| Sbjct 370453 CGCGTCTGGCGCACTACAACAAGCGTTCCACCATCACCAGCCGGGAGGTCCAGACCGCCG 370394 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||| | ||| || ||||| |||| |||||| ||||||||||| |||| Sbjct 370393 TTCGTCTGCTGCTGCCAGGTGAACTTGCCAAGCACGCAGTCTCCGAGGGGACCA 370340 >seq297272 Length=244611 Score = 140 bits (154), Expect = 5e-27 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||||||||| ||||| ||||| ||| |||| || ||| || || Sbjct 160498 GAGCCGCTGCTGCGCGAGAACCCCCGGCGCTTCGTCATGTTTCCGATCGTGTATGAGGAC 160557 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| |||||| || ||||||||||||||||| ||||| | |||||||| ||||| Sbjct 160558 ATCTGGCGCATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGTGGAGGAGGTGGACCT 160616 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||| |||||||| ||| | ||| ||||| || |||||| || Sbjct 160617 GGGCAAGGACCTCCCCCACTGGGACGGGCTCAAGCCCGAGGAGCGGCACTTCATCTCCCA 160676 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946 | |||| ||| || |||||||||||||| |||||||| ||||||||||| Sbjct 160677 CATCCTTGCC-TTCTTCGCCGCCAGCGACGGCATCGTTAACGAGAACCTGG 160726 Score = 132 bits (146), Expect = 7e-25 Identities = 178/242 (74%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||| | ||||| || || |||| | || ||| |||| | | | || ||||| || Sbjct 163338 CGACAGGGACCGTCTATTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAGGCGGA 163397 Query 1456134 CTGGGCGATGAAGTGGATCAACAA--GGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 |||||| | || ||||||| ||| | || ||| ||| |||| |||||| |||||| Sbjct 163398 CTGGGCACTAAACTGGATCAGCAACCGCAGCGCC---ACA-TTTGGCGAGCGCATCGTCG 163453 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| || |||||||||||||| |||||||| ||| ||||||| ||||| | Sbjct 163454 CGTTTGCAGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTCGCATCCATCTTCTGGCTGA 163513 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAA 1456310 ||||||| || ||||||||||| | || ||| |||||||| | |||||||| ||||| Sbjct 163514 AGAAGCGGGGACTCATGCCCGG-CCTCACCTTCAGCAACGAGCTCATCAGTCGGGACGAG 163572 Query 1456311 GT 1456312 || Sbjct 163573 GT 163574 >seq99657 Length=1088 Score = 136 bits (150), Expect = 6e-26 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||| ||||| || ||| |||| | | |||| |||| || Sbjct 533 ATCTACAAGGTGCTCAAACAGGTCCATCCCGACACCGGAGTG------TCCAGCAAGGCC 480 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||| || || |||||||| |||| ||||||| | ||| | | Sbjct 479 ATGTCGATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCGCAGCAGAGTCGTCT 420 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| | || ||||||||||| || ||| Sbjct 419 CGGCTGGCTCACTACAACAAGCGCTCGACCATCACGAGTCGGGAGATCCAGACAGCTGTG 360 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| || |||||||| | ||| || || ||||||||||||| Sbjct 359 AGGCTCCTGCTGCCGGGTGAACTGGCAAAGCATGCGGTGTCCGAGGGCACCA 308 >seq12212 Length=1067 Score = 136 bits (150), Expect = 6e-26 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||| ||||| || ||| |||| | | |||| |||| || Sbjct 825 ATCTACAAGGTGCTCAAACAGGTCCATCCCGACACCGGAGTG------TCCAGCAAGGCC 878 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||| || || |||||||| |||| ||||||| | ||| | | Sbjct 879 ATGTCGATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCGCAGCAGAGTCGTCT 938 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| | || ||||||||||| || ||| Sbjct 939 CGGCTGGCTCACTACAACAAGCGCTCGACCATCACGAGTCGGGAGATCCAGACAGCTGTG 998 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| || |||||||| | ||| || || ||||||||||||| Sbjct 999 AGGCTCCTGCTGCCGGGTGAACTGGCAAAGCATGCGGTGTCCGAGGGCACCA 1050 >seq128792 Length=281088 Score = 122 bits (134), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||| ||||| |||||| |||| | | |||| ||| | Sbjct 273206 ATCTACAAGGTGCTCAAACAGGTCCACCCCGACACCGAAGTG------TCCAGAAAGGGC 273153 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||| |||||||| || || |||||||| |||| ||||||| | ||| | | Sbjct 273152 ATGTCGGTCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCGCATCAGAGTCGTCT 273093 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| | || ||||||||| | || ||| Sbjct 273092 CGGCTGGCTCACTACAACAAGCGCTCGACCATCACGAGTCGGGAGATCCAGTCAGCTGTG 273033 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| || |||||||| | ||| || || ||||||||||||| Sbjct 273032 AGGCTCCTGCTGCCGGGTGAACTGGCAAAGCATGCGGTGTCCGAGGGCACCA 272981 >seq2134 Length=352074 Score = 100 bits (110), Expect = 4e-15 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 1601279 AGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCATGGTCGGCGTT 1601337 |||||| ||||||||| |||| |||| | || |||||| ||| ||| | | | ||| Sbjct 155221 AGCGGCTTGTGCGGGTAGTACAGCACGTGGGCCAGCGTGTCCATGCGCACG-TGGAAGTT 155163 Query 1601338 GAGCGACAC-GACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCG 1601396 | | || || | || || |||||||||||| || | |||||| |||| || || Sbjct 155162 G-GTGATGTAGATGCCCATGGCCTGCTTGCCCATAGCAGACTGGTAAGTGTTACGGGGAC 155104 Query 1601397 CCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGT 1601456 ||||||||||| | |||||||||||||||||||| ||||||| || | ||||| Sbjct 155103 TCTGGTTGTGGTCCGGGAACGGGATGATGGACGCGCACACGCCCAGGATCATGGACGGGT 155044 Query 1601457 GGACCTCGACGTGCGT 1601472 ||| |||| ||| || Sbjct 155043 GGATCTCGCAGTGGGT 155028 Score = 86.0 bits (94), Expect = 9e-11 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 1602103 AGGGCCAGGTTGCTCACGAGGCCGCACGA-GCCGCCCTCGGGCGTCTCCACGGGACACAA 1602161 ||||| ||||| | ||||| || |||| | ||||||||| ||||| |||| || | Sbjct 154531 AGGGCGAGGTTCTTGACGAGCCC-CACGGCGTGGCCCTCGGGTGTCTCGGCGGGGCAGAT 154473 Query 1602162 GAGACCCGCCACGCTGTCGCGCAGTTGGCGCACCTTGGGCAGTTTGCCCTCCTTGTTGAT 1602221 | ||| || | ||| | | || |||||| ||||| ||| ||||| || ||| Sbjct 154472 CATGCCCCACAGGGTGTTGTGAAGCTGGCGCGGCTTGGCCAGCTTGCCGTCGCGTCCGAT 154413 Query 1602222 GGGCGTGTTGACGCGGCGCATGTTGGACAGGGCCGACGTGACGGTCATGCGATTGTGCAT 1602281 ||||| |||||||||||| | || ||| |||| |||| | ||||| || || ||| Sbjct 154412 GGGCGAGTTGACGCGGCGGAGGTGGGAGAGGGTGGACGCGTAGGTCAGCCGGTTCAGCAC 154353 Query 1602282 CTGC-GCGACG 1602291 |||| |||||| Sbjct 154352 CTGCAGCGACG 154342 >seq149517 Length=118462 Score = 98.7 bits (108), Expect = 1e-14 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 1601197 GTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGCGCCGATGAC 1601256 || |||||||| ||||||| |||||||||||| |||| | | | | ||| | Sbjct 21649 GTAGCTCATGACGGCCACGGTCGCATTCTGGCCGGCGGGGATGTCCTCGAAGTGGATCAG 21708 Query 1601257 GTCCTCCATGGC---GGTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACAC 1601313 ||| |||| ||||| |||| |||| ||||||||| |||| || || Sbjct 21709 ---CTCGATGGTCTTGGTCTTGACCATCGGCCGATGCGGGTAGACCAGGAGGTAGAGCAG 21765 Query 1601314 CGTGTCGATGGCATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTGCTTGCCCATGGC 1601373 | ||||||| || | ||| |||| | | | || || ||||||||||||||| Sbjct 21766 TGAGTCGATGCGATTGCGCTGGTTCAGCGCAATGGTGCCCATGGCCTGCTTGCCCATGGC 21825 Query 1601374 CGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCA 1601433 |||||| |||||||||||| ||||||||||| | ||||||||| | ||||| Sbjct 21826 GCACTGGTATGTGTTGCGCGGCGACTGGTTGTGGTGCGGGTACGGGATGAGGCCGGCGCA 21885 Query 1601434 GGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGT 1601472 | |||| |||| | ||| | || ||||| |||||| Sbjct 21886 GACGCCGAGCAGCGTGAACGGCTCGATCTCGAGGTGCGT 21924 >seq255993 Length=445044 Score = 95.1 bits (104), Expect = 2e-13 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1818067 CCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCA 1818126 ||||| |||| || || ||| |||||| |||||||| ||| | |||| ||||| Sbjct 22760 CCATGTTAAATGGGGTGACGATCTCGGGGAAGGTGAGGTTCTGGGCGATAGAGCGGGGCA 22819 Query 1818127 CGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGT 1818186 |||| |||||||||||| | | |||||| || ||||||| | || |||| || | Sbjct 22820 CGCCGACCTCGTCAATGCGCAGGTTGGGGTCTGGCGTGATGACCGTCCGGGCGGAGAAAT 22879 Query 1818187 TGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCT 1818243 || ||||| |||||| ||||| || || | ||||| |||| ||| | ||||| Sbjct 22880 CCACACGCTTTCCCATGAGGTTGCCTCGAATGCGACCCTCTTTGCTCTTCAGCCGCT 22936 >seq88354 Length=13520 Score = 91.5 bits (100), Expect = 2e-12 Identities = 165/235 (70%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||| ||||||| ||||| |||||| ||| | |||| |||| | Sbjct 10086 ATCTACAAGATGCTCAAACAGGTCCACCCCGATGCCGGAGTA------TCCAGCAAGGCT 10033 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG-G 725029 ||||||||||||||| || || ||||||||| |||| ||||| ||| | || || Sbjct 10032 ATGTCGATCATGAACAGCTTCGTGAACGACATGTTCGAGGGCATC-GCAGCAGGGTCGTC 9974 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGC 725086 |||||||| | || ||||||||| | ||| | |||| || ||||| |||| || Sbjct 9973 CCGCCTGGCTCACTACAACAAGCG---CTCGACCATCACGAGCAGGGAGATTCAGAAGGC 9917 Query 725087 CGTG-CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || || || || |||||||| | ||| | || ||||||||||| Sbjct 9916 CGTGATGCTCCCACAGTCG-GGTGAACTGGCAAAGCATACGGTGTCCGAGGGCAC 9863 >seq353048 Length=1477 Score = 86.0 bits (94), Expect = 9e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| | | ||||||| ||| || ||||||||||| ||||| || |||||| Sbjct 389 TGCTTCCTGCTCCAAATGAAGGACGACAGTATAGAGGGCATCTACGACACCCTGAAGCAG 448 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 || ||||||||||||||| | || ||||| ||||| Sbjct 449 TGTGCGCTCATCTCCAAGTCTGCAGGCGGAATCGG 483 >seq128081 Length=1306280 Score = 86.0 bits (94), Expect = 9e-11 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 261821 TACCTGGAACCGTGGCACGCCGACCTCATCAACTGGCTGGACCTCAAAAAGAACCACGGC 261880 |||||||| || |||||||| ||| | | ||| |||||||| ||||||||| ||| Sbjct 763217 TACCTGGAGCCATGGCACGCGGACGTGTTTGACTTCCTGGACCTGAAAAAGAACACGGGC 763276 Query 261881 AAGGGAGGGGGAGAACCGGGCGCGCGCGATCTCTTTTACGGCCTGTGGACGTGCGACCTG 261940 |||| |||||||||| || || |||||||| |||| ||| |||| |||||| Sbjct 763277 AAGGA----GGAGAACCGG--GCACGGGATCTCTTCTACGCCCTCTGGATCCCAGACCTG 763330 Query 261941 TTTATGCGCCGCATGGTGACCGGCCGCGA-CTGGTCGCTCTTTTGCCCGTCCGAGGCGCC 261999 || ||||| || ||| || || || ||||| ||| | || || ||| || Sbjct 763331 TTCATGCGGCGGGTGG-AACAGGATCAGATGTGGTCCCTCATGTGTCCCCATGAGTGCCC 763389 Query 262000 CGGCCTGCACGAATGCTATGGCGCGGCCTTTGA 262032 ||||||||||| ||| || | | |||||| Sbjct 763390 TGGCCTGCACGAGGTCTACGGAGAAGACTTTGA 763422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7142173017473704