Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq118272 134 1e-26 seq368444 87.8 2e-12 >seq118272 Length=246527 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| |||||| || |||| || |||||||| || || || Sbjct 49831 CTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAA 49772 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||||| | || | | ||||||||| ||||| ||||| | Sbjct 49771 GATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTTGTCTTGAATCTTAGCCTTCACGTT 49712 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||||||||| |||||||| | |||||| ||||| || |||| ||||| || Sbjct 49711 TTCAATCGTGTCGCTCGGCTCCACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGAC 49652 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 49651 GAAGATCTGCAT 49640 Score = 134 bits (148), Expect = 1e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||||||||||| || |||||| | || |||| |||||| || ||||| Sbjct 51427 CTCCTTTTGGATGTTGTAATCGGACAGGGTTCGGCCATCTTCCAACTGCTTTCCAGCAAA 51368 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| |||| || ||||||||| |||||| ||| | | Sbjct 51367 GATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 51308 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || ||||||| || ||||| Sbjct 51307 CTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCAC 51248 Query 35725 AAATATCTGCATTC 35738 || || ||||||| Sbjct 51247 GAAGATTTGCATTC 51234 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| | ||| || |||| || || ||||| || || || Sbjct 50059 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCGAA 50000 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| |||| || | | |||||||||| ||| || ||||| | Sbjct 49999 GATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTT 49940 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||||||||| || ||||| | ||||||||| || || || | || || || Sbjct 49939 TTCGATCGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGAC 49880 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 49879 AAAAATCTGCAT 49868 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | ||| | || ||| || || |||||||| || | | Sbjct 51006 CCACCACGAAGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAC 50947 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || || || || || || || | ||||||||||| | ||| Sbjct 50946 AGCGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGA 50887 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| ||||||| ||| | || | | || || || | || || Sbjct 50886 ATGCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACT 50827 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || |||| ||| || ||||| || ||||| Sbjct 50826 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 >seq368444 Length=413118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| || | || ||||| |||| || |||||| || |||||||| || | | Sbjct 77699 CCGCCACGCAAGCGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 77758 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | ||| ||| | || ||||||||||| |||||||| |||| ||||||||||| Sbjct 77759 AGGGTGCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTC 77811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448711542139360