Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq118272 143 3e-29 seq16628 141 9e-29 seq368444 84.2 2e-11 >seq118272 Length=246527 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| || ||||| || ||||| ||||| ||||||||||||||| Sbjct 49866 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 49807 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| || || |||| ||| ||||| |||||||| Sbjct 49806 AAGGTGCGTCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 49747 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || || || || |||||||| || || | || | |||| |||||| || ||||| Sbjct 49746 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCA-CGTTTTCAATCGTGTCGCTCGGCTCCAC 49688 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| ||||| | ||||| ||||| || ||||| Sbjct 49687 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 49640 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| |||| || ||||| || |||||||| || || ||||||||||| Sbjct 51236 TTCCACCGCGGAGCCGCAGAACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCG 51177 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || ||| || ||||| ||||| ||||| || | |||||| || || || | Sbjct 51176 ACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAG 51117 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || ||| || || | ||||| | || | Sbjct 51116 GAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATGGTGTCACTGGGCTCGA 51057 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||||||||| || ||||| | |||||| || ||||||||||| Sbjct 51056 CCTCGAGAGTAATGGTCTTGCCGGTCAGAGTTTTTACAAAAATTTGCAT 51008 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||| ||| || || || || || || || || ||||||||||| | |||| || Sbjct 50769 AGTCGCAGCACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGA 50710 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| ||||||||||||||| || || ||||| Sbjct 50709 CCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCC 50650 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || | ||||| | ||||| || || || Sbjct 50649 TTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTG 50590 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| |||||||| || ||||| Sbjct 50589 ATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 50552 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | |||||| ||||| ||||| || ||||||||||| Sbjct 50550 CCACCGCGGAGCCGGAGAACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 50491 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || ||||| || ||||| || || ||||||||||||||||| || || Sbjct 50490 AGGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGG 50431 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| |||||| || | |||||| | || || Sbjct 50430 ATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTTTCAATTGTGTCACTGGGCTCGACT 50371 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | ||||| ||||| || ||||| Sbjct 50370 TCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 50324 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||| || || || || ||||| || | ||| | Sbjct 50313 AGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCCGACAGGGTTCGG 50254 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| ||||||||||||||| || |||||||| Sbjct 50253 CCATCTTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGAGGAATGCCTTCC 50194 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || | ||||||| | ||||| || || || Sbjct 50193 TTGTCCTGAATTTTGGCCTTCACGTTCTCGATTGTGTCGCTGGGCTCCACCTCCAGTGTG 50134 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | ||||| ||||| || ||||| Sbjct 50133 ATTGTCTTACCGGTGAGGGTTTTGACGAAGATCTGCAT 50096 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 ||||||| ||| || || || ||||| || || || ||||||||||| | || | ||| | Sbjct 50997 AGTCGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGC-GTGCG 50939 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| ||||| |||||||| || || || | ||||||||| || || || ||||| || Sbjct 50938 GCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATGCCCTC 50879 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || ||| ||||| || | || || | || || ||||| || Sbjct 50878 CTTGTCTTGGATCTTTGCCTTGACGTTTTCGATGGTATCACTGGGCTCAACTTCGAGGGT 50819 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||| || || || |||||||| Sbjct 50818 GATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 50780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||| || || || |||||||||||| | ||| | Sbjct 50085 AGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGG 50026 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| ||||| || ||||| || || |||| |||||||||||| || || || || || Sbjct 50025 CCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCC 49966 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| || || || | |||||| || || || ||||| || Sbjct 49965 TTGTCCTGGATTTTGGCCTTCACGTTTTCGATCGTGTCGCTCGGCTCAACCTCGAGCGTG 49906 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || || ||||| ||||| Sbjct 49905 ATCGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 49868 >seq16628 Length=231947 Score = 141 bits (156), Expect = 9e-29 Identities = 794/1251 (63%), Gaps = 59/1251 (5%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||||| ||||||| || | ||||||||||| || || || | || | Sbjct 200368 CAACACATGCTTATGCGCGTTTCGATTGGCATTCACGGGGACGATCTTAGCAGTGCGATT 200309 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 ||||||||| | | |||||| ||| ||||||||| || || ||||| | || | Sbjct 200308 GAAACGTACAACCTCATGTCTGAAAAATGGTTTACGCAAGCATCTCCCACACTTTTCAAC 200249 Query 7684 GCGGGCAC----AAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGA 7739 || || || |||| | ||| |||| |||||||| | ||| || || Sbjct 200248 GCTGGGACTCCTAAAC----CGCAACTGTCGAGTTGTTTTTTATTGCAAATGAAAGACGA 200193 Query 7740 CAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGC-G 7798 ||||| || || || ||| | || ||| | || || ||||| |||| |||| | Sbjct 200192 TAGCATAGAAGGAATATACGATACACTGAAACAGTGTGCACTCATTTCAAAAT-CGGCTG 200134 Query 7799 GCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCA 7858 | |||||||| | ||| || || || | || || || || ||| | || | Sbjct 200133 GTGGAATAGGAATTAACATACACAACATTCGTGCTTCTGGAAGTTACATAGCAGGAACAA 200074 Query 7859 ACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATG 7918 | || | | | | |||| | | |||||| | || |||| || ||| ||| || | | Sbjct 200073 ATGGTACATCGAACGGTATTGTACCCATGCTACGAGTGTATAACAACACGGCACGTTACG 200014 Query 7919 TAGACCAGGGGGGAAAGCGCAAAGGCGC-----CGCT-GCCATCTATTTGGAGCCGTGGC 7972 | || ||||| || || |||| | | || | ||||||||| |||| ||||||| Sbjct 200013 TCGATCAGGGTGGCAA---CAAAAGACCGGGAGCGATCGCCATCTATCTGGAACCGTGGC 199957 Query 7973 ACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAG 8032 |||| || | | || | | |||| || | ||| ||||| || | | Sbjct 199956 ACGCAGATGTGTTCGATTTTTTGGATCTAAAAAAAAATACCGGTAAAGAAGAGAGTAGGG 199897 Query 8033 CGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCG 8092 | || ||||| || | ||| |||||| | |||||| | || |||| | || | | Sbjct 199896 CACGTGATCTTTTTTACGGTTTGTGGATTCCCGATTTATTCATGAAAAGGGTGGAAGAAG 199837 Query 8093 ACGCACAATGGTCGCTCATGTGCCC---CGATCGTTGCCCTTTATTAAAAAACGTTTACG 8149 | | | ||||||| | ||||| || ||| || ||| | || | || |||| Sbjct 199836 ATGGAATATGGTCGTTGATGTGTCCACACGAAAGT---CCTCACCTGCAAGATGTATACG 199780 Query 8150 GTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCG---CGT-ACGTGCGG 8205 | | | || ||| || | ||| | |||||| ||||| | ||| | ||| Sbjct 199779 GCGAAGACTTCGAAAAACTTTACGTTCGATACGA----GACGGAGAAACGTTATCGGCGT 199724 Query 8206 CAAGTGAAAGCGCG-CGAC-CTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTA 8263 ||||| || | | || ||| | | || |||||||||| |||| ||||| |||| Sbjct 199723 CAAGTTCGTGCACAACAACTCTGGA--GTGCAATTATCGAATCACAAACGGAAACTGGTA 199666 Query 8264 TGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCA 8323 ||| || ||| | ||||||||||| ||||| ||| ||||||| ||||| || | Sbjct 199665 CGCCATATATGTTATACAAAGACGCCTGCAATAGAAAATCGAATCAAAAAAACGTCGGTA 199606 Query 8324 CCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC---GACGAAG 8380 | || || || ||||| || | ||||| ||| |||||| || || ||||| | Sbjct 199605 CAATAAAATGTAGTAATCTATGTACCGAAATCGTAGAGTACA---CGTCCGTTGACGAGG 199549 Query 8381 TGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACA 8440 | ||||| || ||| |||||||| | ||| || |||||| ||| | | ||| Sbjct 199548 TTGCCGTGTGTAATTTAGCGTCGATTGCTTTGAATCGATTCGTTTATC-ATG----GACA 199494 Query 8441 CTTACGACTTTGAACAATTGAAAAACGCC--GT-GCAAGTGACGGTAC--GCAATTTAGA 8495 ||| ||| |||||| ||||| || | || | || | || || | || || | Sbjct 199493 CTT-CGATTTTGAAAAATTG-----CGTCAAGTAACTAGAGTCGTAACTAGAAACTTGAA 199440 Query 8496 TCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCA 8555 | || || ||||| |||| |||||| | |||||| | || |||||||| || Sbjct 199439 TAAAATAATCGATGTTAATTATTATCCAATTCCCGAAGCGAAACTTTCAAACATGCGGCA 199380 Query 8556 CAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCC 8615 | || |||| | || || |||||| |||||||||| || | || | || || Sbjct 199379 TCGCCCTATTGGAATCGGAGTCCAAGGTTTGGCCGACGCTTTCATTTTATTAAGACTTCC 199320 Query 8616 CTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGG 8675 | ||| | | ||||| | | || | ||||| ||||| | ||||| || Sbjct 199319 TTTCGACTGTGACGAAGCTTGTGAAATTAATAAGAAAATCTTTGAAACAATATATTATGG 199260 Query 8676 CGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGG 8735 || || |||| || ||| |||| | | | || || ||||||| ||||| | || Sbjct 199259 AGCTTTGGAAGAGAGTTGTGAACTGTCTAAAAAGTTTGGTCCGTACGAGACGTACCCTGG 199200 Query 8736 CAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCC 8786 || || | | ||||| | || ||||| ||||||||||| || || Sbjct 199199 TAGTCCAGTATCACAAGGAATCCTTCAGTACGATATGTGGAATGTAACACC 199149 >seq368444 Length=413118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| |||||||| || || ||||| || ||||||||||| | |||| | Sbjct 77711 CGCAGCACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCA 77770 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| ||||| |||| ||||||||| || || || |||||| Sbjct 77771 TCCTCCAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCT 77824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503064141679840