Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq16628 753 0.0 >seq16628 Length=231947 Score = 753 bits (834), Expect = 0.0 Identities = 1497/2200 (68%), Gaps = 34/2200 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||||| || |||| ||| ||||| || |||||||| || || |||| || | ||| Sbjct 198645 GCAGGTTTGGTTCGTAAATAATACATTCCAGTTTTCAGTCCAAGTTTCCAACCACAAAAA 198704 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||||||||| ||||| ||| |||| | || || || ||||||| ||||||||| Sbjct 198705 TGCATACTTGTAAGTTTTCCATACGTTGGCTGAGCGATGTGTATATTCAGTGATTGACTT 198764 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || | ||||||||| | |||||||| ||||| | |||| |||| |||| ||||||| Sbjct 198765 TGGTCCACGAAAGCTCCGCGATCTGCCGACATTTCCAAAATATTCTTCTGAGAAATTTCC 198824 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTATTTTGAATGGATCCA 68634 || | ||| | | | | ||| | || | || | || ||||||| || ||| Sbjct 198825 CACACAGTGCGATACAACATTTTTAATTCTTTAGGTATATTCAGCTTTTGAACAGAACCA 198884 Query 68635 CCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACT 68694 | | || | | ||| || | | || ||||| || ||| ||| || Sbjct 198885 TTGTTAGCAATCAGTTCATTTTTTAAGTTGTCGTTCCATAAACCGAGACGCGTCAAATCT 198944 Query 68695 CTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATA 68754 | | |||||| |||| ||||| |||||||| ||||| | || | ||||| || | | Sbjct 198945 TTCAAGAGATGGTGATTTACTATCTGAAATTCTCCAGAAAGTACGCGCCGAGTATACACA 199004 Query 68755 TTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTT 68814 || || || |||||||||| | || ||||| || ||||| || ||||| ||||| ||| Sbjct 199005 TTGCTAGTGTATGGTTCCATTGCCTCGTTATTACCAAGAATCTGCGCAGTAGATGCTGTT 199064 Query 68815 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGA 68874 ||||| ||||| || | | |||||| | | ||| || | ||| | ||||||| | Sbjct 199065 GGCATTGGTGCTACGAGAAGACTATTGCGGATTCCAAAGCTTTTAATTCTTTCTTTTAAA 199124 Query 68875 TGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCG 68934 ||||||||| || | || ||| |||||||| | |||||| || || ||||| Sbjct 199125 GCAGACCAATCCCACAGGTTTGAAGGTGTTACATTCCACATATCGTACTGAAGGATTCCT 199184 Query 68935 T----TACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTC 68990 | |||| | || ||| || || || || || || || || || ||||| Sbjct 199185 TGTGATACTGGACTA----CCAGGGTACGTCTCGTACGGACCAAACTTTTTAGACAGTTC 199240 Query 68991 ACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 69050 |||||| | || || || || ||||| |||||||| || || |||||||| | || Sbjct 199241 ACAACTCTCTTCCAAAGCTCCATAATATATTGTTTCAAAGATTTTCTTATTAATTTCACA 199300 Query 69051 TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 ||||| || ||||| ||| ||| | ||| || || || ||||| || || || Sbjct 199301 AGCTTCGTCACAGTCGAAAGGAAGTCTTAATAAAATGAAAGCGTCGGCCAAACCTTGGAC 199360 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATA 69170 || || || ||||| | ||| | | | |||||| || ||||| ||||| |||||||| Sbjct 199361 TCCGATTCCAATAGGGCGATGCCGCATGTTTGAAAGTTTCGCTTCGGGAATTGGATAATA 199420 Query 69171 ATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTT 69230 ||||| ||| || |||||||| | |||| ||| ||| || || | | ||| Sbjct 199421 ATTAACATCGATTATTTTATTCAAGTTTCTAGTTACGACTCTAGTTACTTGACGCAATTT 199480 Query 69231 GAGAAAATCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACA 69290 |||||| || |||||| ||| || ||||| || | || |||| |||||| Sbjct 199481 TTCAAAATCGAAGTGTCCATGATAAACGAATCGATTCAAAGCAATCGACGCTAAATTACA 199540 Query 69291 AACTGCTACCTCATTA--GAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 || || ||||| | | | | || || | || || || |||||||||||||||||| Sbjct 199541 CACGGCAACCTCGTCAACGGACGTG--TACTCTACGATTTCGGTACATAGATTACTACAT 199598 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 || || || || | |||| ||||| ||| | || |||||||| ||||| | ||| Sbjct 199599 TTTATTGTACCGACGTTTTTTTGATTCGATTTTCTATTGCAGGCGTCTTTGTATAACATA 199658 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 | || ||||||||||| | || ||||||||||| | |||| | ||| Sbjct 199659 TATGGCGTACCAGTTTCCGTTTGTGATTCGATAATTGCACTCCAGAGTTGTTGTGCACGA 199718 Query 69469 ATT--ACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCAT 69526 | | ||| | ||||| ||||| | || ||| | || || |||||| || | Sbjct 199719 ACTTGACG--CCGATAACGTTTCTCCGTCTCGTATCGAACGTAAAGTTTTTCGAAGTCTT 199776 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 | || | ||||| | || ||||| ||| | |||||||||||| ||||| | ||| Sbjct 199777 CGCCGTATACATCTTGCAGGTGAGGACTTTCGTGTGGACACATCAACGACCATATTCCAT 199836 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 | || | || | |||||| |||| |||||||||||| | | | ||| ||||| | | Sbjct 199837 CTTCTTCCACCCTTTTCATGAATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTG 199896 Query 69647 TTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAAT 69706 ||| | ||||| || || ||||||||||| ||||| | ||| || | | ||| | | Sbjct 199897 CCCTACTCTCTTCTTTACCGGTATTTTTTTTTAGATCCAAAAAATCGAACACATCTGCGT 199956 Query 69707 GCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGT 69766 |||| ||||| ||||| || || || ||||||||| ||| || || |||||||| | || Sbjct 199957 GCCACGGTTCCAGATAGATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGT 200016 Query 69767 ATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTG 69826 | | || ||||| ||||| |||| ||||| || | |||||| || ||| ||||||||| Sbjct 200017 AACGTGCCGTGTTGTTATACACTCGTAGCATGGGTACAATACCGTTCGATGTACCATTTG 200076 Query 69827 TTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTG 69886 |||| | || |||||||| || ||||| || || | |||||||| || | Sbjct 200077 TTCCTGCTATGTAACTTCCAGAAGCACGAATGTTGTGTATGTTAATTCCTATTCCACCAG 200136 Query 69887 CCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCAT 69946 || ||| || || || ||||| |||||| ||| || ||||| || ||||||||||| | Sbjct 200137 CCGATTTTGAAATGAGTGCACACTGTTTCAGTGTATCGTATATTCCTTCTATGCTATCGT 200196 Query 69947 CTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATA 70006 || |||| | | | |||||| || |||| ||| | | ||| || || || || | Sbjct 200197 CTTTCATTTGCAATAAAAAACAACTCGACAGTTGCGGTTTAGGAGTCCCAGCGTTGAAAA 200256 Query 70007 ATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTG 70066 ||| |||||||| || || |||||||||||||| | || ||||| |||||||| || Sbjct 200257 GTGTGGGAGATGCTTGCGTAAACCATTTTTCAGACATGAGGTTGTACGTTTCAATCGC-A 200315 Query 70067 ATTCT-ATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGT 70125 | || | ||| | ||||| || |||| || ||||| | ||| || || || || Sbjct 200316 CTGCTAAGATCGTCCCCGTGAATGCCAATCGAAACGCGCATAAGCATGTGTTGTGGCCGC 200375 Query 70126 TCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAA 70185 ||||| ||| ||| || || | | | | ||||| || ||||| ||||| Sbjct 200376 TCTACAACTTTCCCATTAATCTTGAGTAAATGCGCACGTTCCAATGTCTTAAATCCAAAG 200435 Query 70186 TAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATT 70243 ||||| || ||||| || | ||||||| || || |||| ||| || | Sbjct 200436 TAGTTATAATTGAAA--TCGCGATCGTAAACGATGGACGAGTTTAAAAAATCTGCATTAT 200493 Query 70244 TGGTAACTATATCCATAACAGTAGGTGAGATAATC---GGAGATCGTTTACCATT-TTTA 70299 | |||| || | || || | | ||||| || | ||| || || || Sbjct 200494 TCATAACGAT---CTTATATGTTTCTTCGCTAATCATGGGCGTAGATTTTCCGTTAGTTT 200550 Query 70300 GGATTAACATAGTTGA-ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTT 70358 ||| |||| ||| ||||||| ||| || || ||||| | ||||| ||||| || Sbjct 200551 CATTTACCATA--TGATATAAATCAGTCATCACCTCGCTAAAAACCTTTTTCGTTTCTTT 200608 Query 70359 GTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGT 70418 ||||||||| || ||||| | || ||||||||||| |||||||| || |||| ||||| Sbjct 200609 GTGTAAATTAGAAATGGCGAGTCGCGCTGCTAGAATGGCATAGTCTGGGTGTTTCGTAGT 200668 Query 70419 ACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATA 70478 || || || |||| || ||||| |||| | ||| | || || || || ||| Sbjct 200669 CATCGTTGCAGCAGTTTCTGCTGCTAAATTATCCAGTTCCACTGTCGTTACGCCTGGATA 200728 Query 70479 TAGCCCTTGAATAACTTTCATGGCTATTTTGATA-GGATCTATGAATTCTGTGTTCAGAC 70537 || || || ||||| ||| || || | | ||||||| ||| ||||||||||| | Sbjct 200729 TAATCCGACGATCACTTT-TTGGGTAATTACACAGGGATCTACGAAATCTGTGTTCAGCC 200787 Query 70538 CATAACATAATTTTCTAATACGAGATGTAATTTTATCAAA 70577 ||||||| | ||| ||||| ||||| || ||||| || || Sbjct 200788 CATAACAAAGTTTACTAATGCGAGACGTTATTTTGTCGAA 200827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683736208670880