Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16628 219 3e-52 seq8286 214 1e-50 seq266908 174 1e-38 >seq16628 Length=231947 Score = 219 bits (242), Expect = 3e-52 Identities = 485/716 (68%), Gaps = 20/716 (3%) Strand=Plus/Minus Query 40719 TTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAG 40778 |||||| ||| ||| |||||||| | |||||| || || | ||| |||| || Sbjct 231133 TTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTTCTCCGCGGATCTACCGATGCCAAA 231074 Query 40779 AAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACAT--ATTTGT 40836 |||| |||||| | || | ||||| ||| | || ||||| | | |||| | Sbjct 231073 GAATTGTCAGAACGTGGTATTCACATATGGGACCAAAACGGTTCT----CGTCGATTTCT 231018 Query 40837 C--TAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCA 40894 | |||| |||| || ||| | || ||||| |||||||| || || || |||||||| Sbjct 231017 CGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTTCA 230958 Query 40895 GTCGCGACATTTTGGAGCAAAATAT-GACACTATGTACTCTGATTATACCAATAAAGGAA 40953 | ||| ||||||||||| | ||| || ||| | || | || ||| || |||| Sbjct 230957 ATGGCGTCATTTTGGAGCCACCTATAGAAACTC-GCACACAGACTATGGAAACGAAGGTG 230899 Query 40954 TGGATCAA-TTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATA 41012 | |||||| ||||| | | | || | || ||| |||||| | ||| || || Sbjct 230898 TTGATCAAATTACAAGAC-TCGTTGAAATCATCAAAAATGATCCCAACGACCGCCGAATG 230840 Query 41013 ATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTG 41072 ||||| || ||||||| ||||| || | | |||| | ||||| ||||| | Sbjct 230839 ATATTATGTTCGTGGAATCCAACAGATATTAAGAAAATGGTCCTACCACCATGTCACTGT 230780 Query 41073 TTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGT 41132 || ||||| ||||| | ||| ||| || || |||||||||||||| | || | Sbjct 230779 TTGGCACAGTTCTACGTAGACGATGATGAGCTCTCGTGTCAATTGTATCAGCGTTCTGCC 230720 Query 41133 GACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATT 41192 || |||||| | || || ||||||||||| |||||||| ||||| ||||| | ||||| Sbjct 230719 GATATGGGATTGGGTGTACCGTTTAACATTGCGAGTTACGCTCTTCTCACACACATGATG 230660 Query 41193 GCACACGTTACCAATTTAAAAC---CTGGTGAATTTGTTCACACGTTAGGAGATGGACAT 41249 ||| | || || | ||||| |||||||||||||||||| ||||| |||| || Sbjct 230659 GCAAAGGTGAC---TGGAAAACGACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCAC 230603 Query 41250 ATTTACATTAATCACATAGAG-CCGTTAACAGAACAACTGACACGAAAACCTAGACCATT 41308 |||||| |||| ||| | ||| |||| || ||||| | ||| |||| |||| || Sbjct 230602 ATTTACCTTAACCACGTGGAGTCCGTCAA-GCAACAATTAGAACGGGAACCGCGACCTTT 230544 Query 41309 TCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTT 41368 ||| | | | || | || | || | ||| ||| ||| | |||||||| Sbjct 230543 TCCGAAATTGCGCATCAGGCGAGACGTGACTGATATTTTTGACTTTCGATGTGATGATTT 230484 Query 41369 TGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGTATGAT 41424 || | |||||| ||||| ||||| ||||| | ||||| ||||| || |||| Sbjct 230483 TGAGTTGATCGATTATAATCCATACCCAAAAATAAAAATGGAGATGTCGGTCTGAT 230428 >seq8286 Length=1257 Score = 214 bits (236), Expect = 1e-50 Identities = 484/716 (68%), Gaps = 20/716 (3%) Strand=Plus/Minus Query 40719 TTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAG 40778 |||||| ||| ||| |||||||| | |||||| || || | ||| |||| || Sbjct 987 TTTTGGCGAGGAGTTGTGGAAGAACTTCTCTGGTTTCTCCGCGGATCTACCGATGCCAAA 928 Query 40779 AAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACAT--ATTTGT 40836 |||| |||||| | || | ||||| ||| | || ||||| | | |||| | Sbjct 927 GAATTGTCAGAACGTGGTATTCACATATGGGACCAAAACGGTTCT----CGTCGATTTCT 872 Query 40837 C--TAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCA 40894 | |||| |||| || ||| | || ||||| |||||||| || || || ||||| || Sbjct 871 CGATAGCTTAGGTTTTTTTGATCGAGAAGAAGGGGATCTTGGACCGGTCTACGGATTCCA 812 Query 40895 GTCGCGACATTTTGGAGCAAAATAT-GACACTATGTACTCTGATTATACCAATAAAGGAA 40953 | ||| ||||||||||| | ||| || ||| | || | || ||| || |||| Sbjct 811 ATGGCGTCATTTTGGAGCCACCTATAGAAACTC-GCACACAGACTATGGAAACGAAGGTG 753 Query 40954 TGGATCAA-TTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATA 41012 | |||||| ||||| | | | || | || ||| |||||| | ||| || || Sbjct 752 TTGATCAAATTACAAGAC-TCGTTGAAATCATCAAAAATGATCCCAACGACCGCCGAATG 694 Query 41013 ATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTG 41072 ||||| || ||||||| ||||| || | | |||| | ||||| ||||| | Sbjct 693 ATATTATGTTCGTGGAATCCAACAGATATTAAGAAAATGGTCCTACCACCATGTCACTGT 634 Query 41073 TTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGT 41132 || ||||| ||||| | ||| ||| || || |||||| ||||||| | || | Sbjct 633 TTGGCACAGTTCTACGTAGACGATGATGAGCTCTCGTGTCAACTGTATCAGCGTTCTGCC 574 Query 41133 GACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATT 41192 ||||||||| | || || ||||||||||| |||||||| ||||| ||||| | ||||| Sbjct 573 GACATGGGATTGGGTGTACCGTTTAACATTGCGAGTTACGCTCTTCTCACACACATGATG 514 Query 41193 GCACACGTTACCAATTTAAAAC---CTGGTGAATTTGTTCACACGTTAGGAGATGGACAT 41249 ||| | || || | ||||| |||||||||||||||||| ||||| |||| || Sbjct 513 GCAAAGGTGAC---TGGAAAACGACCTGGTGAATTTGTTCACAATTTAGGCGATGCCCAC 457 Query 41250 ATTTACATTAATCACATAGAG-CCGTTAACAGAACAACTGACACGAAAACCTAGACCATT 41308 |||||| |||| ||| | ||| |||| || ||||| | ||| |||| |||| || Sbjct 456 ATTTACCTTAACCACGTGGAGTCCGTCAA-GCAACAATTAGAACGGGAACCGCGACCTTT 398 Query 41309 TCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTT 41368 ||| | | | || | || | || | ||| ||| ||| | |||||||| Sbjct 397 TCCGAAATTGCGCATCAGGCGAGACGTGACTGATATTTTTGACTTTCGATGTGATGATTT 338 Query 41369 TGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGTATGAT 41424 || | |||||| ||||| ||||| ||||| | ||||| ||||| || |||| Sbjct 337 TGAGTTGATCGATTATAATCCATACCCAAAAATAAAAATGGAGATGTCGGTCTGAT 282 >seq266908 Length=1092028 Score = 174 bits (192), Expect = 1e-38 Identities = 303/437 (69%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 40992 GATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATG 41051 |||||| | ||| || || ||||| || ||||||| ||||| || | | ||| Sbjct 125636 GATCCCAAGGACCGCCGAATGATATTATGTTCGTGGAATCCAACAGATATTAAGAAAATG 125577 Query 41052 GCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGT 41111 | | ||||| ||||| | || ||||| ||||| | ||| ||| || || ||| Sbjct 125576 GTCCTACCACCGTGTCACTGTTTGGCACAGTTCTACGTAGACGATGATGAGCTCTCGTGT 125517 Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTAT 41171 ||||||||||| | || | ||||||||| | || || ||||||||||| |||||||| Sbjct 125516 CAATTGTATCAGCGTTCTGCCGACATGGGATTGGGTGTACCGTTTAACATTGCGAGTTAC 125457 Query 41172 GCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAAC---CTGGTGAATTTGTT 41228 ||||| ||||| | ||||| ||| | || || | ||||| |||||||||||||| Sbjct 125456 GCTCTTCTCACACACATGATGGCAAAGGTGAC---TGGAAAACGACCTGGTGAATTTGTT 125400 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAG-CCGTTAACAGAACAACT 41287 |||| ||||| |||| || |||||| |||| ||||| ||| |||| || ||||| | Sbjct 125399 CACAATTTAGGCGATGCCCACATTTACCTTAACCACATGGAGTCCGTCAA-GCAACAATT 125341 Query 41288 GACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGA 41347 ||| |||| |||| ||||| | | | || | || | || | ||| Sbjct 125340 AGAACGGGAACCGCGACCTTTTCCGAAATTGCGCATCAGGCGAGACGTGACTGATATTTT 125281 Query 41348 TGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACAT 41407 ||| ||| | |||||||||| | |||||| ||||| ||||| ||||| | || Sbjct 125280 TGACTTTCGATGTGATGATTTTGAGTTGATCGATTATAATCCATACCCAAAAATAAAAAT 125221 Query 41408 GGACATGTCTGTATGAT 41424 ||| ||||| || |||| Sbjct 125220 GGAGATGTCGGTCTGAT 125204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395666182599460