Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq266908 93.3 4e-14 seq16628 93.3 4e-14 seq8286 84.2 2e-11 >seq266908 Length=1092028 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31156 TCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTT 31215 || ||||| || | ||||| || |||||||| | | ||| || ||||| || |||| | Sbjct 125359 TCCATGTGGTTAAGGTAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGT 125418 Query 31216 AGATGGGTCAATTTGGCAATCACATGAACCAAAAGCGCATAACTCGCTATGTTGAATGGT 31275 |||| || || |||| || | ||| || |||||||| ||||| || ||| Sbjct 125419 TTTCCAGTCACCTTTGCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGT 125478 Query 31276 ACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCGGTC 31335 ||||||||||||| |||||||| || ||||| || ||| || || ||||| || Sbjct 125479 ACACCCAATCCCATGTCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCT 125538 Query 31336 ACGTAAAATTG 31346 ||||| || || Sbjct 125539 ACGTAGAACTG 125549 >seq16628 Length=231947 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 31171 TAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTTAGATGGGTCAATTTG 31230 ||||| || |||||||| | | ||| || ||||| || |||| | |||| || Sbjct 230598 TAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTTT 230657 Query 31231 GCAATCACATGAACCAAAAGCGCATAACTCGCTATGTTGAATGGTACACCCAATCCCAAA 31290 || |||| || | ||| || |||||||| ||||| || |||||||||||||||| | Sbjct 230658 GCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCATA 230717 Query 31291 TCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCGGTCACGTAAAATTG 31346 |||||||| || ||||| || ||| || || ||||| || ||||| || || Sbjct 230718 TCGGCAGAACGCTGATACAATTGACACGAGAGCTCATCATCGTCTACGTAGAACTG 230773 >seq8286 Length=1257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 31171 TAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTCTTAGATGGGTCAATTTG 31230 ||||| || |||||||| | | ||| || ||||| || |||| | |||| || Sbjct 452 TAAATGTGGGCATCGCCTAAATTGTGAACAAATTCACCAGGTCGTTTTCCAGTCACCTTT 511 Query 31231 GCAATCACATGAACCAAAAGCGCATAACTCGCTATGTTGAATGGTACACCCAATCCCAAA 31290 || |||| || | ||| || |||||||| ||||| || |||||||||||||||| Sbjct 512 GCCATCATGTGTGTGAGAAGAGCGTAACTCGCAATGTTAAACGGTACACCCAATCCCATG 571 Query 31291 TCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCGGTCACGTAAAATTG 31346 |||||||| || ||||| | ||| || || ||||| || ||||| || || Sbjct 572 TCGGCAGAACGCTGATACAGTTGACACGAGAGCTCATCATCGTCTACGTAGAACTG 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510648151261760