Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq297272 100 9e-16 seq16628 93.3 1e-13 >seq297272 Length=244611 Score = 100 bits (110), Expect = 9e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| | ||||| ||||| | ||||| || | || || ||| | | || || | Sbjct 163440 CGAGCGCATCGTCGCGTTTGCAGCCGTCGAGGGCATCTTCTTCT-CGGGATCGTTCGCAT 163498 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| |||| ||||| ||||| |||| ||| || ||||| || ||||| || | Sbjct 163499 CCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCA 163558 Query 443825 TCAGTCGGGACGAGG 443839 ||||||||||||||| Sbjct 163559 TCAGTCGGGACGAGG 163573 >seq16628 Length=231947 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| ||| |||| ||| | || |||| |||||| ||| || ||||||||||| || || Sbjct 200060 CGGTATTGTACCCATGCTACGAGTGTATAACAACACGGCACGTTACGTCGATCAGGGTGG 200001 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 | |||| | || |||||| || ||||||| ||||| ||||||||||| || Sbjct 200000 CAACAAAAGACCGGGAGCGATCGCCATCTATCTGGAACCGTGGCACGCAGA 199950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1580816632731940