Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq323919 919 0.0 seq222509 836 0.0 seq40492 830 0.0 seq231572 659 0.0 seq252761 605 1e-168 seq305778 596 5e-166 seq188984 306 1e-78 seq72456 295 2e-75 seq43907 230 9e-56 seq195851 188 3e-43 seq338308 114 5e-21 >seq323919 Length=1419 Score = 919 bits (1018), Expect = 0.0 Identities = 528/534 (99%), Gaps = 5/534 (1%) Strand=Plus/Minus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 472 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 412 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 352 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 22362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 292 Query 22363 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 22422 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 291 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGG-TTTCACCGTAACACGCCACATCTTGC 233 Query 22423 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC 22482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC 173 Query 22483 GTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGC 22542 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 172 GTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTG-ACACTATCCCATATCACCAGC 114 Query 22543 TCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATG 22602 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 113 TCACCGTCTTTCATTGCCATACGGAACTCCGGATGAGCATTCATCAGGCGGGCAAG-ATG 55 Query 22603 TGAATAAAGGCCGGATAAAA-CTTGTGCTTA-TTTTTCTTTACGGTCTTTAAAA 22654 |||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 54 TGAATAAAGGCCGGATAAAACCTTGTGCTTATTTTTTCTTTACGGTCTTTAAAA 1 >seq222509 Length=1638 Score = 836 bits (926), Expect = 0.0 Identities = 472/475 (99%), Gaps = 2/475 (0%) Strand=Plus/Minus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 414 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 354 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 294 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 22362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 234 Query 22363 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 22422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 174 Query 22423 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC 22482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC 114 Query 22483 GTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGC 22542 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 113 GTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCA-CAGC 55 Query 22543 TCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAA 22597 ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 54 TCA-CGTCTTTCATTGCCATACGGAACTCCGGATGAGCATTCATCAGGCGGGCAA 1 >seq40492 Length=309812 Score = 830 bits (920), Expect = 0.0 Identities = 465/467 (99%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150410 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 150469 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150470 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 150529 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150530 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 150589 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 22362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150590 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 150649 Query 22363 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 22422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150650 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 150709 Query 22423 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC 22482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 150710 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC 150769 Query 22483 GTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGC 22542 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 150770 GTTTCAGTTTGCTCATGGAAAACGGTGTAACAA-GGTGAACACTATCCCATATCACCAGC 150828 Query 22543 TCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAG 22589 |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 150829 TCACCGTCTTTCATTGCCATACGGAACTCCGGATGAGCATTCATCAG 150875 >seq231572 Length=86682 Score = 659 bits (730), Expect = 0.0 Identities = 374/377 (99%), Gaps = 2/377 (1%) Strand=Plus/Plus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84986 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 85045 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA-TCAGCACCTT 22241 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 85046 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAATCAGCACCTT 85105 Query 22242 GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT 22301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85106 GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT 85165 Query 22302 GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT 22361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85166 GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT 85225 Query 22362 ATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTG 22421 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 85226 ATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGGTTTCACCGTAACACGCCACATCTTG 85285 Query 22422 CGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAA 22481 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 85286 CGAATATATGTGTAGAAACTGCCGGAAATCGTCGT-GTATTCACTCCAGAGCGATGAAAA 85344 Query 22482 CGTTTCAGTTTGCTCAT 22498 ||||||||||||||||| Sbjct 85345 CGTTTCAGTTTGCTCAT 85361 >seq252761 Length=1245 Score = 605 bits (670), Expect = 1e-168 Identities = 382/400 (96%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGT-TGTAATTCATTAAGCATTCTGCC 22181 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 394 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTGTGATTCATTAAGCATTCTGCC 335 Query 22182 GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT 22241 ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 334 GACATGGAAGCCATCACAAACGGCATGATGAACCTGATTCGCCAGCGCGATCAGCACCTT 275 Query 22242 GTCGCCTTGCGTATAATATTT-GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT 22300 |||||||||| ||||||||| |||||||||| |||||||||||||||||| ||| |||| Sbjct 274 GTCGCCTTGCA-ATAATATTTTGCCCATGGTG-AAACGGGGGCGAAGAAGTGGTCAATAT 217 Query 22301 TGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA 22360 |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 TGGCCACG-TTAAATC-AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA 159 Query 22361 TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT 22420 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 158 TATTCTCAATAAACCCTTTAGGGAAA-AGGCCAGGTTTTCACCGTAACACGCCACATCTT 100 Query 22421 GCGA-ATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGC-GATGA 22478 |||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 99 GCGATATAT-TGTGTAGAAACTGCCGGAAATCGGCGTGGTATTCACTCCAGAGCGGATGA 41 Query 22479 AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGG 22518 |||||||||||||||||||||||||||||||||||||||| Sbjct 40 AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGG 1 >seq305778 Length=2160 Score = 596 bits (660), Expect = 5e-166 Identities = 334/335 (99%), Gaps = 1/335 (0%) Strand=Plus/Minus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 275 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 215 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 155 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 22362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 95 Query 22363 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 22422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 94 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 35 Query 22423 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTG 22457 |||||||||||||| |||||||||||||||||||| Sbjct 34 GAATATATGTGTAG-AACTGCCGGAAATCGTCGTG 1 >seq188984 Length=379713 Score = 306 bits (338), Expect = 1e-78 Identities = 195/211 (92%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 22335 CCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAG 22394 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 349463 CCAGGGATTGGCTGAGACGAAAAACATATCCTCAATAAACCCTTTAGGGAAATTGGCCAG 349404 Query 22395 GTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC 22454 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct 349403 GTTTTCACCGTAACACCCCACATCTTGCGAATATATGTGTGGAAACTGCCGGAAATCGAC 349344 Query 22455 GTGGTATTCACTCCAGAGCGATGAAAACG-TTTCAGTTTGCTCATGGAAAACGGTGTAAC 22513 ||||| | ||||||||||||||||| ||| |||||||||||||||||||||| ||||||| Sbjct 349343 GTGGTTTACACTCCAGAGCGATGAATACGTTTTCAGTTTGCTCATGGAAAACTGTGTAAC 349284 Query 22514 AAGGGTGAACACTATCCCATATCACCAGCTC 22544 | || ||||| || ||||||||||||||| Sbjct 349283 ACGGAAGAACAAAATACCATATCACCAGCTC 349253 >seq72456 Length=526646 Score = 295 bits (326), Expect = 2e-75 Identities = 203/217 (94%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473801 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 473742 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 473741 ACATGGAAGCCATCACAAACGGCATGATGAACCTG-ATCGCCAGC-GCATCAGCACCTTG 473684 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 ||||||||||||| |||||||||||| |||||| |||||| ||| |||||||||| Sbjct 473683 TCGCCTTGCGTAT-ATATTTGCCCAT-GTGAAA--CGGGGCG-AGA--GTGTCCATATT- 473632 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG 22339 |||||||||||||| ||||||||| |||||||||||| Sbjct 473631 GCCACGTTTAAATC-AAACTGGTG-AACTCACCCAGG 473597 >seq43907 Length=176907 Score = 230 bits (254), Expect = 9e-56 Identities = 127/127 (100%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62938 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 62879 Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 22232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62878 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 62819 Query 22233 CAGCACC 22239 ||||||| Sbjct 62818 CAGCACC 62812 >seq195851 Length=1016 Score = 188 bits (208), Expect = 3e-43 Identities = 115/118 (97%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 22123 aaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 961 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT 22240 |||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 962 ACAT-GAAGCCATCACAAACGGCATGATGAACCTG-ATCGCCAGC-GCATCAGCACCT 1016 >seq338308 Length=358797 Score = 114 bits (126), Expect = 5e-21 Identities = 67/68 (99%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 22224 CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG-CCCATGGTGAAAACGGGGG 22282 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 343633 CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCCATGGTGAAAACGGGGG 343574 Query 22283 CGAAGAAG 22290 |||||||| Sbjct 343573 CGAAGAAG 343566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183635508323256