Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq336791 93.3 5e-14 seq297272 84.2 3e-11 >seq336791 Length=793321 Score = 93.3 bits (102), Expect = 5e-14 Identities = 257/389 (66%), Gaps = 24/389 (6%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 |||| || | ||||||||| | ||| || || || | || ||||| | |||| Sbjct 535520 ACGGCAATTTGACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGA 535579 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCA 14167 ||||| || || || |||| || | ||| ||||| ||||| || ||||| || Sbjct 535580 CGGTTTGTAGCTGCAATGATCACAACTCCC---TCGTTTGCTTCAAATCCGTCCATTTCG 535636 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGC-ATACC---ACCC 14221 || | ||| || | |||||| || ||||||||||| ||| | | ||||| ||| Sbjct 535637 ACTAACATTTGGTTTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCT 535696 Query 14222 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTT 14281 | ||| ||| || || |||||||||||||| |||| ||||| || ||| Sbjct 535697 CTATGGCG------ACCCACCGCATCAATTTCATCGATAAAAATAATACAAGGAGCATT- 535749 Query 14282 TCACGGGCAAC---TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATC 14338 ||| | | |||||| || | ||||| | | ||||||||||| |||||||| Sbjct 535750 --ACGTTTACCCTGTTCAAACATGTTACGCACACGGCTTGCACCGACACCTACAAACATT 535807 Query 14339 TCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCT 14398 || ||||||| | | |||| | | || || || |||| ||||| || || ||| Sbjct 535808 TCAACAAAATCAGAGCCGGATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCT 535867 Query 14399 CGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || ||||| || || || || Sbjct 535868 TTAGCAAGAAGTGTCTTACCGGTTCCAGG 535896 >seq297272 Length=244611 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| |||||||||| |||||| ||||||||||||||||| |||||| || | |||||| Sbjct 165064 ATACTCCCCAACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAGGAAATGTGCTCCAT 165005 Query 129787 AAAATCAAATGGGTTCTTTGAGTT 129810 || || || ||||||| ||||| Sbjct 165004 GAAGTCGAAAGGGTTCTCCGAGTT 164981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615578864263520